SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126739

Length: 1328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126739 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	0.0	99%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	99%
Sma3	Bi-ubiquitin	-	-	1.738e-08	-

Source	Gene names
Sma3	AT5G03240; At1g55060; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_130075; CHLREDRAFT_140045; CHLREDRAFT_196873; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00035709001; GUbB1; GUbB2; H0303G06.8; LOC_Os03

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02890.3	UBQ14 Ubiquitin family protein chr4:1278747-1279664 REVERSE LENGTH=305	99%
RefSeq	Arabidopsis thaliana	NP_974516.4	polyubiquitin 10 [Arabidopsis thaliana]	99%
RefSeq	Populus trichocarpa	XP_002316978.1	predicted protein [Populus trichocarpa]	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVENSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 307

Fln nts: ATGGAATGTTTTTCAGTTTTGGCTCATTTTCTCAACGCGATTGCTGTAATCGTTTCCGTTTGATTTCCTTTAGGTTGTGTATTGTGTTGATTTCGTTTAAAG_-_ATGCAGATATTCGTGAAGACGTTGACCGGTAAGACCATAACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCCGACCAGCAGCGTCTCATCTTTGCTGGTAAACAGTTGGAAGATGGACGCACTCTTGCCGACTACAACATCCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTTAGAGGTGGGATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACAATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCCGGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGACGGACGCACTCTTGCCGATTACAACATCCAGAAGGAGTCGACTCTTCACCTTGTCCTGCGGCTCAGAGGCGGGATGCAAATCTTTGTGAAAACCCTGACCGGAAAGACCATCACGCTGGAAGTCGAGAGCTCTGACACTATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTACAACATTCAGAAGGAGTCAACCCTGCATCTTGTCCTTCGGCTCCGTGGTGGTATGCAGATATTTGTGAAGACGTTGACAGGCAAGACGATCACACTGGAGGTTGAGAACTCCGATACGATTGACAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGACTATAACATCCAGAAGGAATCTACACTTCACCTTGTTTTGCGTCTGCGTGGCGGGTTTTGA___AATTCTGGACATATATTTTTATGAATAGGGTCTAAATGCGCATTTCATTGAATTCTTAGCTTAGCTTACCCTGTCAAATACTGGTTATTTTTACTTTGTTAGTCTCTGGGTCTCTTATGAAGAGAACTTTCAATAAAAAATATTTTTACTTTGTTAGTCTCTGGGTCTCTTATGAAGAGAACTTTCAATAAAAAATTAAAGGTTTGCACGTTATTTCTATGAGGGTTTGCAATGTGTTCATGAACCCTGGAACTCGTTTTTCAAAAATGATATTATAATATTATATATCTTCGATATATTTTCCAGCC

Fln Alignment:

AllPine_a_rep_c65524___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVENSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Q3E7T8________________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1088	10		90		0.999898
1259	81	6			0.999943
1282		10	90		0.90298
1284	90			10	0.902981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain