SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126720

Length: 1224 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126720

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH	-	-	89%
FL-Next	tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	97%
Sma3	Chlorophyll a/b-binding protein	-	-	-

Source	Gene names
Sma3	cab;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	photosynthesis, light harvesting	GO:0009765	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27690.1	LHCB2.4, LHCB2.3, LHCB2 photosystem II light harvesting complex gene 2.3 chr3:10256002-10256921 FORWARD LENGTH=266	86%
RefSeq	Arabidopsis thaliana	NP_189406.1	photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002321186.1	light-harvesting complex II protein Lhcb2 [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q00984

Fln msg:

Fln protein: MATASAIQSSSLAGQTLLRPQQNELVGKVGASQARITMRRTIRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK*

Protein Length: 268

Fln nts: ATGGGGGCATAACTTCACAATTGAAAGATCATCACTTGCTAACTCATCTCAGTTTTTCTCATCGTCCCGCTCACC_-_ATGGCAACTGCCTCAGCCATCCAAAGCTCAAGCTTGGCAGGACAGACTCTCCTGAGGCCGCAGCAGAATGAGCTCGTCGGGAAGGTAGGCGCGTCGCAGGCTCGAATCACCATGCGAAGAACCATCAGGAGCGCCCCTGAGAGTATTTGGTATGGACCTGACCGCCCCAAATACCTGGGACCCTTCTCCGAACAGACGCCATCGTATCTCACCGGAGAATTTCCCGGCGACTACGGGTGGGACACAGCCGGGCTCTCTGCCGACCCCGAGACCTTCGCTAAAAACAGAGAGCTGGAGGTGATCCACTGCAGATGGGCCATGTTGGGGGCGCTGGGCTGCGTTTTCCCGGAGCTGTTGGCCAAAAACGGTGTGAAATTTGGGGAAGCCGTGTGGTTCAAGGCCGGGGCGCAGATATTCTCGGAGGGAGGCCTCGATTACCTGGGGAACCCTAACCTGATCCACGCGCAGAGCATTCTGGCCATCTGGGCGTGCCAGGTTGTGCTCATGGGATTGATTGAAGGATACAGAGTTGGGGGAGGACCCCTTGGGGAGGGTTTGGACCCTCTGTACCCAGGGGGTGCCTTCGACCCACTGGGGTTGGCCGACGACCCTGAGGCGTTCGCGGAGCTGAAGGTAAAGGAGATTAAGAACGGGCGACTGGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCGATCGTGACCGGGAAGGGCCCCATTGAAAATCTCTACGACCACTTGGCGGACCCCACTGCCAACAATGCCTGGGCCTATGCCACCAATTTCGTTCCCGGCAAATGA___AGTAAAGCGACGGAAAATAAAAGATGGCCGTAATCTGTGTATCATACATCTGACAGACTTTCTTGTTGATAAGCCAATTTTCTTTCAAACAGATGTTACTCGATTTCCTGTTAAGTTCCTGCATCGGTTTTTTTTCTGGTTCACGGTTGCTTTCTTTTCGCTTGTAATCTTAACTGCGATTGGCCTTTCAGTTACGTACTCTTCTCTTTTAGATATAGATGACGTAACACCGTAGTCTGTCCTCGGATTGAGGCTATTGTATCCTTTGATCTTGTTCAAAAAAAGGTAAAGTACTAAGTGTTGTGTGTAGTTAAAAATCTAGGTTTTATTTGTACAAAAGTAAATTGT

Fln Alignment:

AllPine_a_rep_c65383___MATASAIQSSSLAGQTLLRPQQNELVGKVGASQARITMRRTIRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVXXXXXXXXXXXXXXXXAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK
Q00984________________MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1164	81	4			1.0
1197		20		80	0.995498

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain