SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126685

Length: 1018 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126685

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S8e family protein [Arabidopsis thaliana] dbj\|BAB08958.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24082.1\| unknown protein [Arabidopsis thaliana] gb\|AAM45100.1\| unknown protein [Arabidopsis thaliana] gb\|AED91006.1\| Ribosomal	-	-	0.0	90%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	95%
Sma3	TGF-beta inducible protein	-	-	1.354e-09	-

Source	Gene names
Sma3	At5g06360; CHLREDRAFT_135480; GSVIVT00038895001; LCI30; MICPUCDRAFT_44560; MICPUN_62565; OSTLU_47791; Os07g0673100; OsI_27295; OsJ_25542; Ot17g02500; P0470D12.138; PHATRDRAFT_12394; PHYPADRAFT_217036; POPTRDRAFT_576508; POPTRDRAFT_667616; POPTRDRAFT_81392

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	ribosome	GO:0005840	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	SPX, N-terminal	IPR004331	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G06360.1	Ribosomal protein S8e family protein chr5:1944835-1946512 FORWARD LENGTH=260	90%
RefSeq	Arabidopsis thaliana	NP_196254.1	Ribosomal protein S8e family protein [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002308319.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
522		80		20	0.995493
595	80	20			0.995493
597			83	16	0.994515
602			83	16	0.994515
605	83		16		0.994516
606		20		80	0.995493
607	80			20	0.995493
608			20	80	0.995493
610	80	20			0.995493
614		20		80	0.995493
864		25		75	0.996474
865	25			75	0.996474
866	80			20	0.995493
868	80	20			0.995493
870	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain