SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126680

Length: 1271 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126680 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione S-transferase zeta class n=1 Tax=Pinus brutia RepID=D2XZY3_9CONI	-	-	0.0	80%
FL-Next	tr=Glutathione S-transferases zeta 2; Pinus brutia.	-	-	0.0	97%
Sma3	GST class-zeta	-	-	8.575e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	6.213e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		6.213e-27	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		6.213e-27	%
Sma3	Drug metabolism - cytochrome P450	00982		6.213e-27	%
Sma3	Maleylacetoacetate isomerase.	EC:5.2.1.2	-	4.2e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Tyrosine metabolism	00350	4.2e-08	%
Sma3	Styrene degradation	00643	4.2e-08	%
Sma3	Metabolic pathways	01100	4.2e-08	%

Source	Gene names
Sma3	At2g02380; At2g02390; CARSR8; GST; GST1; GST18; GST2; GSTZ; GSTZ-A; GSTZ-B; GSTZ-C; GSTZ1; GSTZ3; GSVIVT00026346001; GSVIVT00035381001; GSVIVT00035382001; LOC_Os11g14040; LOC_Os12g10720; LOC_Os12g10730; OJ1712_E04.21; OgGSTZ2; Os02g0564000; Os12g0210200;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	aromatic amino acid family metabolic process	GO:0009072	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Maleylacetoacetate isomerase	IPR005955	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G02380.1	ATGSTZ2, GSTZ2 glutathione S-transferase (class zeta) 2 chr2:626878-628569 FORWARD LENGTH=223	54%
RefSeq	Arabidopsis thaliana	NP_178344.1	glutathione S-transferase zeta-class 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002328824.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: H6UZH1

Fln msg:

Fln protein: MASFAQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLKDVAGKYSVGDQLTLADIFLVPQVFGARRFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDAKA*

Protein Length: 228

Fln nts: GTACGAGGCACGAATCTACGATTCGGAGTCACCTTGCAGTCCCTATCTTCGAACGCTCGCAATTCACTTTGTGAAGATTCGCTGATCAATTTATAACTACCGACTTATATACCGTCTCGAAACTCTATCCAATTCACAAGTTCCCGTCTCATCTCTTTGCAGCAGGCATCATCCTCACGATTGAGCTCATATATTATCATTC_-_ATGGCATCCTTTGCTCAGGAAAACCCCGCAACCAGTGTTACCTCTTCTAGACTGAAGCTGTACTCTTACTGGCGCAGTTCATGTTCTTGGCGAGTCAGGATTGCTCTCAATCTGAAAGGGTTACCATATGAGTACAAAGCAGTGAATATTGTGCAAGGAGAGCAATTTAGTGAAGAGTTTACCAAATTGAACCCCCTTCAGTTTGTTCCAACATTGGTGGATGGAGATACAATTGTTTCGGATTCGCTTGCCATATTGTTGTACTTGGAGGACAAATTTCCTGAACACCCACTACTCCCAGATGATCATCATTTGAAAGCAATTAGCTTACAGGCCGCCTCTATTATTGGATCAAACATACAACCTCTTCAGAACTTGGTGATCTTGAATTTGATCGAGGAGAAACTGGGAGCAGAGGAGCGTTTGGCATGGCCTAAACCGTTCATAGAGAGAGGTTTTACTGCTTTGGAGAAGTTGTTGAAAGATGTTGCAGGGAAATATTCTGTAGGAGATCAGCTTACATTAGCAGATATCTTTCTTGTCCCACAAGTTTTTGGTGCGAGGCGTTTCAACGTTGACATGTCAAAATTCCCAACTTTGAATAGAATTGACAAAGAATTAGCAGAACTTCCAGAATTCCAGGCTGCTCTGCCTGCAAGACAACCTGATGCAAAAGCATGA___TTTTACAAGGTTTGGCAGTATAATATTATGATTTACAACTCCGTTTTTGTGTAAGTTTTACCATATTTCATATTTCATATTTCACTCTAAGCATTAATACTCTGTTAGTTTGAGAGGGAGATTGCTATGACCTATTACCTTCTAATAATCTTGCAATTAGTACTTGCAGTAATGTATGTAATTGACAAAGGGGACTATCTGCTAAAATTGTGCCTAAGCAGAACATAAATTTCTTAAGGCTTTCCATACTTCATGTAAAACTACCACTTTCAGTGGTTCAAACTTCAGACATTGATAAATGTGGGATTCTGCAGACAAAGTGCTATAGTTATTAAGCAATAATTCTTATTATATCTAATTGCTAGCTTTTCACTAGTTTCTTTGGTCT

Fln Alignment:

AllPine_a_rep_c64988___MASFAQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLKDVAGKYSVGDQLTLADIFLVPQVFGARRFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDAKA
H6UZH1________________MASVSQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFTKLNPLQFVPTLVDGDTIVSDSLAISLYLEYKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVVLNLIEEKLGVEERLAWPKPFIERGFTALEKLLKDVAGKYSVGDQLTLADIFLVPQVFGARRFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDAKA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
646	12		87		0.992554
782	10		90		0.90298
783		10	90		0.90298
785	90	10			0.90298
1214	90	10			0.90298
1216	90	10			0.90298
1218	90			10	0.90298
1253	85	14			0.993533
1254	85	14			0.993533
1255		14	85		0.993533
1256	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
305	327	TGAAATA TGAAATA TGAAATA TG	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain