SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126647

Length: 1274 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126647

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	93%
FL-Next	sp=Calmodulin-like protein 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	31%
Sma3	Calcium binding protein	-	-	-

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P25071

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 17 aas, your sequence is shorter than subject: 248 - 324

Fln protein: MASAVSSRLELEEVFRKFDTNGDGKISKSELSALISEAEIEGVMKEVDSNKDGFINFDELVEANSKNLKAASLMRNSASAVQCAALPGRLELENVFRKFDTNGDGKISKSELSALISEAEIEGVMKEVDSNKDGFINFDELVEANSKNLKAASLMRNSASAVQCAALPGRLELENVFRKFDTNGDGKISKSELSAILKCSSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAARLMLGLASAN*

Protein Length: 249

Fln nts: TTTTTTGTCTTAAAAACGTTAAAAGTAATTGTCTTAAATACAATAGGAAGAGTAAGAGACTGTGTGGTTATTTTAAATATATGTGCATATATTCAAAACTGAAAGTACATGCATTCAACCGTTCAGCCATCATATCATGATAGAGTTAAGCGCTGAGAGCTGAGGTCGGGGAATATTTATTTATTTATTAATTACGGGGCGGCGTGGGCATCAATTAGCTGAAGCGAGGCCCAGCATGAGACGGGCGGCGTTGAGGCCGTTGCTGTTGGCGGCCACGAACTCGTCGAAGCTGATGAAGCAGTCTTTGTTGGAGTCCACGTCCTTCATCACACCACCTCTAGCGCCATCTCCATCTCCTTCTCGAGTCGTAGTATTATCCTATTTGCTTCCCTTCACCATCACCTAGTTCAGCTGCGAGA_-_ATGGCTTCAGCTGTGAGCAGCCGCCTCGAGCTTGAGGAGGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCCAAGTCGGAACTGAGTGCCCTGATTTCGGAGGCGGAGATTGAAGGGGTGATGAAGGAGGTGGACTCCAACAAAGACGGATTCATCAACTTCGACGAGTTGGTGGAGGCCAACTCCAAGAACCTCAAGGCCGCCAGTCTCATGCGAAATTCCGCTTCCGCTGTGCAATGTGCCGCTCTGCCCGGCCGCTTGGAGCTGGAGAACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCCAAGTCGGAACTGAGTGCCCTGATTTCGGAGGCGGAGATTGAAGGGGTGATGAAGGAGGTGGACTCCAACAAAGACGGATTCATCAACTTCGACGAGTTGGTGGAGGCCAACTCCAAGAACCTCAAGGCCGCCAGTCTCATGCGAAATTCCGCTTCCGCTGTGCAATGTGCCGCTCTGCCCGGCCGCTTGGAGCTGGAGAACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTCTAGTGAGGAGGAGATTGATGGTGTGATGAAGGACGTGGACTCCAACAAAGACGGCTTCATCAGCTTCGACGAGTTCGTGGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCCTCGCTTCAGCTAATTGATGCCCACGCCGCCCCTTAATTAATAAATAAATAAATATTCCCCTACCACAGCTCTCAGCGCTTAACTCTATGAATGCATGTACTTTCACTTTTAAAGATATGCACATATAT

Fln Alignment:

AllPine_a_rep_c64601___ELEEVFRKFDTNGDGKISKSELSALI-------SEAEIEGVMKEVDSNKDGFINFDELVEANSKNLKAASLMRNSASAVQCAALPGRL-ELENVFRKFDTNGDGKISKSELSALI-------SEAEIEGVMKEVDSNKDGFINFDELVEANSKNLKAASLMRNSASAVQCAALPGR--LELENVFRKFDTNGDGKISKSELSAILKC---SSSEEEIDGVMKDVDSNKDGFISFDEFV
P25071________________EYRESFRLFDKNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
464		90		9	1.0
547		2		98	0.900134
572			90	1	1.0
1002			80	20	0.995493
1204		83		16	0.994512
1206	33		66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
174	189	TATT TATT TATT TATT	16
1185	1200	AATA AATA AATA AATA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain