SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126572

Length: 903 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126572

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Intron maturase, type II family protein [Arabidopsis thaliana] dbj\|BAB10231.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED95448.1\| Intron maturase, type II family protein [Arabidopsis thaliana]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	RNA binding protein, putative	-	-	2.533e-06	-

Source	Gene names
Sma3	At1g30010; At5g46920; GSVIVT00035367001; LOC_Os10g41790; OSJNBa0057L21.15; Os10g0567500; OsI_34702; OsJ_32510; POPTRDRAFT_199395; POPTRDRAFT_264670; POPTRDRAFT_423872; RCOM_0519900; RCOM_0632970; T1P2.4;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000442	-	0.0	-
Sma3	Reverse transcriptase	IPR000477	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46920.1	Intron maturase, type II family protein chr5:19053668-19055875 FORWARD LENGTH=735	64%
RefSeq	Arabidopsis thaliana	NP_199503.1	Intron maturase, type II family protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002326494.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQE1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 441 aas, your sequence is shorter than subject: 281 - 696

Fln protein: MHMQFHLALAHLRRTNIKYHPAHPHRSLSWRPLSALLDFLQSNASLAGVGFRVYHDHPASPPSRVSITERSNPGFNSEDIYSLAKEDGVKICSSLWINSFREPQKVITSVAGYLKRFELWVLAYQKVCADETGSLPHRNEIHMSVLEQLLALRNAVLDSKFQWGERLNHYIKSPTDKTATNPLSNRKLKILMSSTQPSPFQDKIVHEVLLMIMEPIYEARFSNKSFAFRPGRTAHTALRYIRSNFAGYLWYLKGDLSTLLDGVRVGIVMNALVRDIRDKK*

Protein Length: 282

Fln nts: TGATCA_-_ATGCATATGCAGTTCCATCTGGCATTGGCCCATCTGCGTAGGACTAATATTAAATACCATCCCGCTCATCCTCACAGAAGCCTTTCATGGAGACCACTTAGTGCCTTGTTAGACTTTTTGCAATCAAATGCAAGCTTGGCTGGTGTAGGGTTTAGGGTTTATCATGATCACCCCGCTTCTCCTCCTTCTAGGGTTTCTATCACAGAGCGAAGCAATCCGGGTTTTAATTCAGAAGATATCTACTCATTGGCTAAAGAAGATGGTGTTAAGATATGCTCCAGTTTGTGGATCAACAGTTTCCGAGAACCGCAGAAGGTGATAACCAGCGTGGCTGGTTATCTCAAGAGGTTCGAATTATGGGTGTTGGCTTATCAGAAGGTATGCGCTGACGAGACTGGCTCGTTGCCGCACCGTAATGAGATCCACATGAGTGTTTTGGAACAGCTTCTGGCTCTGAGAAATGCAGTCCTGGACTCCAAGTTCCAATGGGGCGAGCGCCTCAATCATTATATCAAGTCTCCCACGGACAAGACTGCAACTAACCCCTTGTCCAACAGGAAATTGAAGATATTAATGTCAAGTACCCAGCCTTCTCCCTTCCAAGACAAGATTGTTCATGAAGTGTTGCTTATGATTATGGAACCGATATATGAAGCCCGTTTCTCCAATAAGTCTTTTGCTTTTAGGCCTGGGAGGACTGCACATACAGCACTCCGATACATCAGAAGCAATTTTGCAGGTTATCTCTGGTATTTGAAGGGCGACTTGAGTACTCTCTTGGATGGTGTCAGGGTTGGAATTGTGATGAATGCTCTTGTGAGAGATATAAGAGATAAGAAGTGATTGACCTTATTAAGTCTGCTCTCACAACACCTGTTATCACCAGTCGACCAAGGG

Fln Alignment:

AllPine_a_c64217___EDIYSLAKEDGVKICSSLWINSFREPQKVITSVAGYLKRFELWVLAYQKVCADETGSLPHRNEIHMSVLEQLLALRNAVLDSKFQWGERLNHYIKSPTDKTATNPLSNRKLKILMSSTQPSPFQDKIVHEVLLMIMEPIYEARFSNKSFAFRPGRTAHTALRYIRSNFAGYLWYLKGDLSTLLDGVRVGIVMNALVRDIRDKK
B8LQE1________________EDPYTLMKEDGIQVCSNMWVQGFKNPMKMMTNVTGFLKRFELWVIAYQKVCADETGEIPPRNAIRKVVLEDLLALRNAVLQSEFKWGSRTEPYIRSPREKFRTKPLSKTKLKLLSLSARAPPFQDRIVQEVLFMILEPIFEPRFTQKSYAFRPGRSAHTVLRVIRSNFGGYVWFLKGDLSTILDEVKAGIVMTCLTKAIRDKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain