SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126555

Length: 1002 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126555 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor serine/threonine kinase PR5K n=2 Tax=Arabidopsis thaliana RepID=Q38925_ARATH	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Putative rust resistance kinase Lr10	-	-	1.45735e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.102e-06	-

Source	Gene names
Sma3	8ARK1; 8ARK2; 8ARK3; ARK1AS; AT4g18250; At1g67000; At5g38260; At5g38280; At5g39030; F1O19.1; F1O19.6; F20P5.3; GSVIVT00001733001; GSVIVT00004127001; GSVIVT00004129001; GSVIVT00004959001; GSVIVT00004961001; GSVIVT00004966001; GSVIVT00005229001; GSVIVT00005

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	glycerophosphodiester phosphodiesterase activity	GO:0008889	Molecular Function	-
Sma3	glycerol metabolic process	GO:0006071	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3		IPR014045	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Ribonuclease T2, active site	IPR018188	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G38240.1	Protein kinase family protein chr5:15277239-15279317 REVERSE LENGTH=588	50%
RefSeq	Arabidopsis thaliana	NP_198640.1	Protein kinase family protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002317764.1	predicted protein, partial [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: your sequence is shorter than subject: 302 - 431

Fln protein: GLLIAVKILDESKQSEQQFIAEVATVGTTCHINLVRLLGYCFQACKRALVYEYMVNGSLEKYIHGHHMEEMDWKQLFSIAVGTARGIAYLHEDCRNRILHCDIKPHNVLLDANFLPKVADFGLAKISDREESHVSVANRGTVGYAAPEMWSRLYGVVTDKSDVYSYGILLMEMVGRRKNIDYKYLESNSSKFFYAEWAFKQVEKGEFENLRKEDMSEEDQVIAKRLSLVGLWCIQFKASRRPSMSKVVQMLEGDVDITTPPFPFPVDTPLQPSSSHQASSSTASEIQMVDPTSNQTAETSG*

Protein Length: 303

Fln nts: TGGACTTCTAATAGCTGTGAAGATTTTGGATGAGTCGAAACAGAGTGAGCAACAATTCATTGCAGAAGTGGCTACAGTGGGAACGACCTGCCACATTAACCTGGTGCGCCTATTGGGTTATTGTTTTCAGGCATGCAAAAGAGCTTTGGTGTATGAATACATGGTTAATGGCTCTTTGGAGAAGTATATCCATGGACACCACATGGAAGAGATGGATTGGAAACAGTTGTTTTCCATTGCAGTTGGTACAGCTCGCGGCATTGCATACCTACATGAAGACTGCAGAAATCGCATCCTGCACTGTGATATAAAGCCCCACAATGTTCTCCTTGATGCTAATTTTTTGCCCAAAGTTGCAGATTTTGGTCTTGCCAAAATATCGGACAGAGAGGAAAGTCACGTCTCTGTGGCCAATAGAGGAACAGTAGGCTACGCTGCTCCAGAGATGTGGTCAAGGCTGTATGGAGTTGTCACTGATAAATCTGATGTGTATAGCTATGGTATATTACTTATGGAGATGGTGGGGCGAAGGAAGAACATCGATTATAAGTATCTAGAAAGTAACTCAAGTAAATTCTTCTATGCAGAGTGGGCTTTTAAACAAGTGGAAAAGGGAGAGTTCGAAAATCTGAGAAAAGAGGACATGTCAGAGGAAGACCAAGTCATCGCCAAAAGGTTAAGTTTAGTTGGGCTCTGGTGCATACAGTTCAAGGCATCTCGTCGTCCCTCAATGAGCAAAGTTGTCCAGATGTTAGAAGGAGACGTTGACATTACCACTCCTCCATTCCCATTTCCTGTGGACACACCTTTGCAGCCATCTTCTTCTCACCAAGCTTCCTCATCGACTGCTTCAGAGATTCAAATGGTGGATCCCACCAGTAATCAGACTGCTGAAACCTCCGGGTAA___TGTAAATACTACATAGCATAGCAGAAAAATATCCCTAAACGCCAAGTCTAGAGAAGTTTTCAATTGATTCTATTAGGCATGGTGTTATATCTTCG

Fln Alignment:

AllPine_a_c64169___LIAVKIL-DESKQSEQQFIAEVATVGTTCHINLVRLLGYCFQACKRALVYEYMVNGSLEKYIHGHHMEEMDWKQLFSIAVGTARGIAYLHEDCRNRILHCDIKPHNVLLDANFLPKVADFGLAKISDRE-ESHVSVANRGTVGYAAPEMWSRLYGVVTDKSDVYSYGILLMEMVGRRKNIDYKYLESNSSKFFYAEWAFKQVEKGEFENLRK---EDMSEEDQVIAKRLSLVGLWCIQFKASRRPSMSKVVQMLEG
A9NM60________________LVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLFDSD-KWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKRDIESHLVTGVRGTPGYMAPE-W-LLGAGITSKSDVFSYGMVLLEIISGRRNVDN---TRDSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
210	66			33	0.997476
304		66	33		0.997467
334		25	75		0.996473
349		33		66	1.0
435		33		66	1.0
578		33	66		0.997452
602		33		66	0.997452
621	66	33			0.997452
666			33	66	0.997452
679	80		20		0.995493
681		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain