SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126547

Length: 571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene126547
GTATATGGGTTGGGACAATCTTCCACGAACAGTTTTAATGTACTACACAAACTTTATCTCATCCCCGGAAGGCTATTTTCACACTGTTATTTGCAATTCCCAGGAGTTCCAGAATACTTCAGTTAACCATGACTTACATTTCATAAAATGGGATACTCCACCCAAACAACATCCTATGTTATTAACTTCAAATCATTTTGATGAAATGATTGAAAGTGGTGCGCCATTTGCTAGGAAGTTTCCTAAAGGTGATCCGGTACTAGATAAAATAGACAAAGAGATTTTGGGTCGTTCTAATGGCCAATTTACACCTGGTGGATGGTGTGCAGGAAGTTCTATTGGTAGTAAAGATCCCTGTGCTGTAAGGAGTGATCCAACAGTTCTTAGACCTGGGCCAGGTGCCAAGAGGCTTGAAAGCTTGGTTTTGAAACTGCTTGCAACTGAAAACTTTCGTGCTAAGCAATGCAAATAAGATAACCACTTTTATATAGTGTTTCAAAGTTTGCAGACAATAGTAGCACAGAAGATCTTGCCCCTTTATAGAGAAAGCAAGTTGATGCCTTTGGCTGTT

Ace file of the UniGene sp_v3.0_unigene126547 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase CAZy family 14 n=1 Tax=Selaginella moellendorffii RepID=D8R487_SELML	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Acetylglucosaminyltransferase, putative	-	-	6.345e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein xylosyltransferase.	EC:2.4.2.26	-	1.539e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	1.539e-25	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	1.539e-25	%
Sma3	Metabolic pathways	01100	1.539e-25	%

Source	Gene names
Sma3	109N23.3; AT4g03340; AT4g27480; At1g03520; At1g53100; At1g71070; At2g37585; At3g03690; At3g15350; At4g03340; At5g15050; At5g39990; B1015E06.23; BGGP; F23N20.6; F27G19.80; F2G14_170; F4C21.27; F8L10.4; GSVIVT00003832001; GSVIVT00016884001; GSVIVT0002044500

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-
Sma3	isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine	GO:0018153	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 14	IPR003406	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G39990.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein chr5:16004494-16006428 FORWARD LENGTH=447	68%
RefSeq	Arabidopsis thaliana	NP_198815.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002324028.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P276

Fln msg: your sequence is shorter than subject: 157 - 424

Fln protein: YMGWDNLPRTVLMYYTNFISSPEGYFHTVICNSQEFQNTSVNHDLHFIKWDTPPKQHPMLLTSNHFDEMIESGAPFARKFPKGDPVLDKIDKEILGRSNGQFTPGGWCAGSSIGSKDPCAVRSDPTVLRPGPGAKRLESLVLKLLATENFRAKQCK*

Protein Length: 158

Fln nts: GTATATGGGTTGGGACAATCTTCCACGAACAGTTTTAATGTACTACACAAACTTTATCTCATCCCCGGAAGGCTATTTTCACACTGTTATTTGCAATTCCCAGGAGTTCCAGAATACTTCAGTTAACCATGACTTACATTTCATAAAATGGGATACTCCACCCAAACAACATCCTATGTTATTAACTTCAAATCATTTTGATGAAATGATTGAAAGTGGTGCGCCATTTGCTAGGAAGTTTCCTAAAGGTGATCCGGTACTAGATAAAATAGACAAAGAGATTTTGGGTCGTTCTAATGGCCAATTTACACCTGGTGGATGGTGTGCAGGAAGTTCTATTGGTAGTAAAGATCCCTGTGCTGTAAGGAGTGATCCAACAGTTCTTAGACCTGGGCCAGGTGCCAAGAGGCTTGAAAGCTTGGTTTTGAAACTGCTTGCAACTGAAAACTTTCGTGCTAAGCAATGCAAATAA___GATAACCACTTTTATATAGTGTTTCAAAGTTTGCAGACAATAGTAGCACAGAAGATCTTGCCCCTTTATAGAGAAAGCAAGTTGATGCCTTTGGCTGTT

Fln Alignment:

AllPine_a_c64145___GWDNLPRTVLMYYTNFISSPEGYFHTVICNSQEFQNTSVNHDLHFIKWDTPPKQHPMLLTSNHFDEMIESGAPFARKFPKGDPVLDKIDKEILGRSNGQFTPGGWCAGSSIGSKDPCAVRSDPTVLRPGPGAKRLESLVLKLLATENFRAKQC
A9P276________________GWDNLPRTVLMYYTNFVSSPEGYFHTVICNSQVFRNTTVNHDLHYIAWDTPPKQHPTSLTVKNFDDMVKSGAPFARKFAKDDPVLDKIDKELLGRSDGQFTPGGWCVGSRENGRDPCAVRGDPAVFKPGPGDKRLEGLLFKLLAPENFRAKQC

SNPs (tot: 4)

Position	A %	G %	T %	Probability
474	25		75	0.996481
475	25	75		0.996483
476		75	25	0.996483
478	75		25	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain