SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126490

Length: 673 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126490 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-amylase (Fragment) n=5 Tax=Pseudotsuga RepID=C6F9P9_PSEMZ	-	-	6.0e-30	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	POPTRDRAFT_229995; POPTRDRAFT_832848;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23920.1	BAM1, BMY7, TR-BAMY beta-amylase 1 chr3:8641722-8644199 FORWARD LENGTH=575	2.0e-15	52%
RefSeq	Arabidopsis thaliana	NP_189034.1	beta-amylase 1 [Arabidopsis thaliana]	3.0e-15	52%
RefSeq	Populus trichocarpa	XP_002314522.1	predicted protein, partial [Populus trichocarpa]	5.0e-17	57%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
62	33			66	0.997453
519		20		80	0.995503
520		20		80	0.995503
521		20	80		0.995503
522	20	80			0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain