SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126425

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene126425
AATGTCATGTGGGTATCGATATCAACAGTCTGATTTCGAATATGTCTGCACCAGCAGGGTACATGACCAGTAATGGGACAGTTCAGGTATTTGATCTTAAATCTCAGAGGAGCATTCAGTGTTGGATAGACTTTGATGGTGCAGAGAGTCTGCTTAATGTAAGTATTGTACCAGGAGGGATGCCGAAGCCTGATCGGCCACTGATATCTTTTCATGTTAATCTC

Ace file of the UniGene sp_v3.0_unigene126425

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Oryza sativa Japonica Group] dbj\|BAC84732.1\| putative receptor kinase Lecrk [Oryza sativa Japonica Group] gb\|EEC81460.1\| hypothetical protein OsI_24765 [Oryza sativa Indica Group] gb\|EEE66505.1\| hypothetical protein	-	-	1.0e-10	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02420.1	Concanavalin A-like lectin protein kinase family protein chr4:1064363-1066372 REVERSE LENGTH=669	2.0e-14	48%
RefSeq	Arabidopsis thaliana	NP_567234.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	3.0e-14	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: Distance to subject end: 468 aas, your sequence is shorter than subject: 74 - 704

Fln protein: CHVGIDINSLISNMSAPAGYMTSNGTVQVFDLKSQRSIQCWIDFDGAESLLNVSIVPGGMPKPDRPLISFHVNL

Protein Length: 75

Fln nts: AATGTCATGTGGGTATCGATATCAACAGTCTGATTTCGAATATGTCTGCACCAGCAGGGTACATGACCAGTAATGGGACAGTTCAGGTATTTGATCTTAAATCTCAGAGGAGCATTCAGTGTTGGATAGACTTTGATGGTGCAGAGAGTCTGCTTAATGTAAGTATTGTACCAGGAGGGATGCCGAAGCCTGATCGGCCACTGATATCTTTTCATGTTAATCTC

Fln Alignment:

AllPine_a_c63838___HVGIDINSLISNMSAPAGYMTSNGTVQVFDLKSQRSIQCWIDFDGAESLLNVSIVPGGMPKPDRPLISFHVNL
B8LLJ6________________HVGVDINNLVSVETITAGYWNGE-EFHNLSLKSGRNIQAWIDYDHLQTRLNVCITVAGLPRPRRPLISLKIDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain