SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126130

Length: 1147 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126130

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03090.1	ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 expansin A15 chr2:917361-918554 REVERSE LENGTH=253	70%
RefSeq	Arabidopsis thaliana	NP_178409.2	expansin A15 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002323665.1	hypothetical protein POPTRDRAFT_577163 [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMF3

Fln msg:

Fln protein: MLDIKFSEMALVQLASVLCFCWIACAAYAIDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNHESDPQWCLRGTVTVTATNFCPPNYALPNDNGGWCNPPLQHFDMAQPAFQQIAIYKGGIVPIMFRRVPCVRKGGVRFTVNGHSYFNLVLITNVADAGDVEAVSIKGSNTGWQEMSRNWGQNWQSNSYLNGQSLSFRVTTSDGRTVTSYNVAPANWQFGQTFEGLQI*

Protein Length: 260

Fln nts: ATGGGGACCAAATCAGATAACAATTTTGATTTCTTTACTAGTTGGTTTTC_-_ATGTTAGATATTAAATTCAGTGAAATGGCGCTTGTACAACTGGCCTCCGTGCTTTGTTTCTGCTGGATAGCTTGTGCAGCTTATGCAATAGATAGCAGTTGGCAATCCGCGCATGCTACATTTTACGGTGGCAGCGATGCTTCGGGCACAATGGGAGGTGCATGCGGCTACGGTAATTTGTATAGCCAAGGGTACGGCACAAACACCGCTGCTCTGAGCACCGCACTTTTCAACAATGGACTTACTTGCGGTGCCTGCTACGAAATGAAATGCAACCACGAGTCCGATCCTCAGTGGTGTTTACGTGGCACTGTCACCGTTACGGCTACGAACTTTTGCCCACCGAACTATGCACTTCCCAATGATAATGGAGGATGGTGCAATCCACCTCTCCAACATTTCGACATGGCTCAACCTGCTTTTCAACAGATTGCCATTTACAAAGGTGGTATTGTTCCCATAATGTTCCGAAGAGTACCATGTGTGAGGAAAGGAGGAGTTCGATTCACAGTCAATGGGCACTCCTACTTCAACTTGGTGCTCATCACCAACGTAGCAGATGCAGGGGATGTGGAGGCGGTTTCCATTAAAGGTTCCAACACTGGCTGGCAGGAAATGTCACGCAACTGGGGACAGAATTGGCAAAGCAACTCCTATTTGAATGGGCAGAGTCTTTCTTTCCGAGTCACTACCAGCGATGGCAGGACTGTCACTTCCTATAACGTCGCTCCTGCAAATTGGCAATTCGGCCAGACATTTGAAGGACTACAAATATAA___GCTATGCTGACTAAAATGTCCATCTGTAACGTAGTAGTCACGAACCCTACGCCATACACTAATATTTAGTTGTTGACAGGCGATTTTAAGCGGTTATTATTCCGAGGGTCTCTTAGAGTTGAATTAGCGATCCCCAGGTTGTCGCCTGCTTCTTATCGTTGCTGCATAACATGGTTTGCATATTAACTTCTCATTTACGTGGAAGGCCTGTATTATGTTTTTAGTCTTTAAAGCGAAGTTAAAAGATCGGTCGTCTCATTGCTGCGCTAATCTGGGACGGTGATATATTGTATGAGGACATATTTCTTCGTTGCAACATT

Fln Alignment:

AllPine_a_c63298___MALVQLASVLCFCWIACAAYAIDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNHESDPQWCLRGTVTVTATNFCPPNYALPNDNGGWCNPPLQHFDMAQPAFQQIAIYKGGIVPIMFRRVPCVRKGGVRFTVNGHSYFNLVLITNVADAGDVEAVSIKGSNTGWQEMSRNWGQNWQSNSYLNGQSLSFRVTTSDGRTVTSYNVAPANWQFGQTFEGLQI
B8LMF3________________MALLQLASVFCFWWIAGAAYALDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNEETDPQWCLPGTVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAQPAYQQIAIYRGGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNSGWQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRTVTSYNVAPANWQFGQTFEGLQL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
880			40	60	1.0
882		60	40		1.0
909		60	40		1.0
921	60			40	1.0
942		66		33	1.0
947	80	20			0.995493
999			25	75	0.996474
1005	25		75		0.996473
1010		25	75		0.996473
1059	33			66	0.997452
1061	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain