SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126123

Length: 359 nt

UniGene Fasta

>sp_v3.0_unigene126123
AATAGATGGCCTTGCTCCAGTACGGTCAAGCAAACAAGAACAGATTCATAATTCTATTGTATCCACACTTCTTGCTCTTATGGACGGTTTGGATTCTCGAGGTCAAGTAGTTCTCATTGGAGCTACTAACAGGATTGATGCCATTGATGGGGCTCTTCGCCGTCCTGGTCGGTTTGATCGTGAGTTTGTGTTTCCTTTACCTGACTGTAAGGCACGATCTGAAATTTTAGAGATACACACAAGAAAGTGGAAGGAACCTCCGTCAGAGGAATTAAGGAAGGAACTTGCAGCAGCTTGTGTGGGGTATTGTGGTGCTGATCTAAAAGCTTTGTGCACTGAGGCTGCTATCAGAGCCTTCC

Ace file of the UniGene sp_v3.0_unigene126123

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T479_RICCO	-	-	0.0	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Cell division cycle protein 48 homolog	-	-	3.149e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	5.39e-07	-

Source	Gene names
Sma3	AT3G09840; At3g09840; At3g53230; At5g03340; BRAT1501; BRAT3501; BRD906; BRD911; CAFP; CDC48; CDC48A; CDC48D; CDC48E; CHLREDRAFT_134171; CHLREDRAFT_171910; CHLREDRAFT_97976; F12E4_70; GSVIVT00001933001; GSVIVT00002582001; GSVIVT00016023001; GSVIVT000221920

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05910.1	cell division cycle protein 48-related / CDC48-related chr1:1790796-1796503 FORWARD LENGTH=1210	89%
RefSeq	Arabidopsis thaliana	NP_563753.1	cell division cycle protein 48-like protein [Arabidopsis thaliana]	89%
RefSeq	Populus trichocarpa	XP_002327967.1	bromodomain protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACE6

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 119 - 442

Fln protein: IDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFVFPLPDCKARSEILEIHTRKWKEPPSEELRKELAAACVGYCGADLKALCTEAAIRAF

Protein Length: 120

Fln nts: AATAGATGGCCTTGCTCCAGTACGGTCAAGCAAACAAGAACAGATTCATAATTCTATTGTATCCACACTTCTTGCTCTTATGGACGGTTTGGATTCTCGAGGTCAAGTAGTTCTCATTGGAGCTACTAACAGGATTGATGCCATTGATGGGGCTCTTCGCCGTCCTGGTCGGTTTGATCGTGAGTTTGTGTTTCCTTTACCTGACTGTAAGGCACGATCTGAAATTTTAGAGATACACACAAGAAAGTGGAAGGAACCTCCGTCAGAGGAATTAAGGAAGGAACTTGCAGCAGCTTGTGTGGGGTATTGTGGTGCTGATCTAAAAGCTTTGTGCACTGAGGCTGCTATCAGAGCCTTCC

Fln Alignment:

AllPine_a_c63286___IDGLAPVR--SSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFVFPLPDCKARSEILEIHTRKWKEPPSEELRK-ELAAACVGYCGADLKALCTEAAIRA
D5ACE6________________IDGLAVAREHSSGAISVGDRVMSQLLVEMDGLNPRIGVTVIAATNRPDKIDAALMRPGRFDRLVYVGLPNQADRKEIFDIHMRKM--PCGSDLTMLELASLTDGYTGADISSVCREAAMAA

SNPs (tot: 4)

Position	A %	G %	T %	Probability
57	25		75	0.996477
58		33	66	0.997452
62	75	25		0.99649
67	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain