SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125872

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene125872
AATGTAGATTATTGGACTTATCCGATTGTATACGGATAAAAGATCTGCCAGATGGGTTAGGAAAGTTAACATGCCTCGTTAACCTTGTTCTATATCATTGTCGGCTTCTAGACAGTATTCCAGAAAGCATTGGGCGGTTGACGTCGTTGGACTCAATCAACTTATCTTGGATGCAGAGTCT

Ace file of the UniGene sp_v3.0_unigene125872

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002332638.1	predicted protein [Populus trichocarpa]	7.0e-11	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX1

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 59 - 1011

Fln protein: CRLLDLSDCIRIKDLPDGLGKLTCLVNLVLYHCRLLDSIPESIGRLTSLDSINLSWMQS

Protein Length: 60

Fln nts: AATGTAGATTATTGGACTTATCCGATTGTATACGGATAAAAGATCTGCCAGATGGGTTAGGAAAGTTAACATGCCTCGTTAACCTTGTTCTATATCATTGTCGGCTTCTAGACAGTATTCCAGAAAGCATTGGGCGGTTGACGTCGTTGGACTCAATCAACTTATCTTGGATGCAGAGTCT

Fln Alignment:

AllPine_a_c62917___RLLDLSDCIRIKDLPDGLGKLTCLVNLVLYHCRLLDSIPESIGRLTS
C0PPX1________________RILDLSSCEKLKELPHGIENLTSLVNLSFHKCASLRSIPESIGRLKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain