SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125828

Length: 170 nt

UniGene Fasta

>sp_v3.0_unigene125828
AATACGTCTTCTTCGTAATGAGAGCCAATGACAACGGGGAAGGTGGGACTTTTGCTCTTTATTCCCTTATATGCAGACATGCCAAAGTTAACACAATCCCAAATCAGCATCGAACAGATAAACAGCTGACGACCTATAGTCAATCTGAAATTCAAGGTACTTCAGTGGCT

Ace file of the UniGene sp_v3.0_unigene125828

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative potassium transporter n=1 Tax=Nicotiana tabacum RepID=E9KBN5_TOBAC	-	-	9.0e-18	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Potassium transporter	-	-	2.088e-15	-

Source	Gene names
Sma3	At1g31120; At1g60160; At2g35060; At2g40540; At4g13420; At4g19960; At4g33530; F17M5.1; F18F4.60; GSVIVT00028849001; GSVIVT00029418001; GSVIVT00030138001; GSVIVT00030287001; HAK1; HAK11; HAK12; HAK2; HAK3; HAK5; HAK8; HAK9; KT2; KT5; KUP10; KUP11; KUP12; KU

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G31120.1	KUP10 K+ uptake permease 10 chr1:11104375-11107361 REVERSE LENGTH=796	5.0e-22	71%
RefSeq	Arabidopsis thaliana	NP_174397.2	K+ uptake permease 10 [Arabidopsis thaliana]	7.0e-22	71%
RefSeq	Populus trichocarpa	XP_002329922.1	predicted protein [Populus trichocarpa]	5.0e-22	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 56 - 225

Fln protein: YVFFVMRANDNGEGGTFALYSLICRHAKVNTIPNQHRTDKQLTTYSQSEIQGTSVA

Protein Length: 57

Fln nts: AATACGTCTTCTTCGTAATGAGAGCCAATGACAACGGGGAAGGTGGGACTTTTGCTCTTTATTCCCTTATATGCAGACATGCCAAAGTTAACACAATCCCAAATCAGCATCGAACAGATAAACAGCTGACGACCTATAGTCAATCTGAAATTCAAGGTACTTCAGTGGCT

Fln Alignment:

AllPine_a_c62860___YVFFVMRANDNGEGGTFALYSLICRHAKVNTIPNQHRTDKQLTTYSQSEIQGTSVA
A9P149________________YVFVVMRANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYSRQTIKDKSFA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain