SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125786

Length: 362 nt

UniGene Fasta

>sp_v3.0_unigene125786
AATGTCTCTTTGAAGAAATGTTGTCCGTGAGCATGAAACCAAATCAGAGTACCTTCGTTGGTGTCCTATCTGCTTGCAGCCGCACAGGCCTGGTCGAGGAAGGCTGTTATTACTTCCATTCAATGAGTCAATGTCATTCAATCAAAGCAGGACCAGAGCACTATGCTTGCATGGTTGACATTCTTGGCCGTGCAGGACGTCTACATGAGGCAAAAGATCTAATCAAAAGCATGCCATTTGAACCTGATGCTCTCATTTGGGGGGCATTGCTTGGTGCATGCAGAATTCATGGCAACATGGATCTAGGACAGCTTGCAGCAGAACAGCTTTTTGAGTTGGAACCACAAACTTCTTCGACTTAC

Ace file of the UniGene sp_v3.0_unigene125786

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Pentatricopeptide, putative, expressed	-	-	4.09e-10	-

Source	Gene names
Sma3	At1g09410; At1g20230; At2g13600; At2g21090; At2g22070; At2g36730; At3g11460; At3g46790; At3g49170; At4g02750; At4g13650; At4g16835; At4g19191; At4g21300; At4g33990; At5g04780; At5g08510; At5g19020; At5g44230; B1032F05.19; B1080A02.28; CRR2; DYW10; EMB2261

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	3.0e-40	54%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-40	54%
RefSeq	Populus trichocarpa	XP_002327681.1	predicted protein [Populus trichocarpa]	4.99983e-42	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 120 - 370

Fln protein: CLFEEMLSVSMKPNQSTFVGVLSACSRTGLVEEGCYYFHSMSQCHSIKAGPEHYACMVDILGRAGRLHEAKDLIKSMPFEPDALIWGALLGACRIHGNMDLGQLAAEQLFELEPQTSSTY

Protein Length: 121

Fln nts: AATGTCTCTTTGAAGAAATGTTGTCCGTGAGCATGAAACCAAATCAGAGTACCTTCGTTGGTGTCCTATCTGCTTGCAGCCGCACAGGCCTGGTCGAGGAAGGCTGTTATTACTTCCATTCAATGAGTCAATGTCATTCAATCAAAGCAGGACCAGAGCACTATGCTTGCATGGTTGACATTCTTGGCCGTGCAGGACGTCTACATGAGGCAAAAGATCTAATCAAAAGCATGCCATTTGAACCTGATGCTCTCATTTGGGGGGCATTGCTTGGTGCATGCAGAATTCATGGCAACATGGATCTAGGACAGCTTGCAGCAGAACAGCTTTTTGAGTTGGAACCACAAACTTCTTCGACTTAC

Fln Alignment:

AllPine_a_c62810___LFEEMLSVSMKPNQSTFVGVLSACSRTGLVEEGCYYFHSMSQCHSIKAGPEHYACMVDILGRAGRLHEAKDLIKSMPFEPDALIWGALLGACRIHGNMDLGQLAAEQLFELEPQTSSTY
A9P0W0________________LFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain