SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125701

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene125701
AATGTGCCCGTGATTCTGTGGACATAAAGGAACAAAGCGGGTTGGGTAGCTTGCGCTTTTCACTTGGAAGCTGCACTTAAGGAGCTGGTGAATGAGGGTTTGATTGAGGAGGAGAAACTAGACTCCTTCAACATTCCTTTCTATGGTCCAAGTGTGGAGGAGCTAAAGATCGTAGTGGAGACGGAGGACTCGTTTGATATAAAAAGCGTGAGGACTCTGAGT

Ace file of the UniGene sp_v3.0_unigene125701

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative N-methyltransferase [Coffea canephora]	-	-	1.0e-09	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	SAMT	-	-	5.572e-36	-

Source	Gene names
Sma3	AbSAMT1; SAMT; samt;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11480.1	BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr3:3614544-3617137 FORWARD LENGTH=379	1.0e-11	50%
RefSeq	Arabidopsis thaliana	NP_187755.2	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]	1.0e-11	50%
RefSeq	Populus trichocarpa	XP_002307671.1	predicted protein [Populus trichocarpa]	5.0e-12	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQW8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 78 aas, your sequence is shorter than subject: 74 - 394

Fln protein: NVPVILWT*RNKAGWVACAFHLEAALKELVNEGLIEEEKLDSFNIPFYGPSVEELKIVVETEDSFDIKSVRTLS

Protein Length: 75

Fln nts: AATGTGCCCGTGATTCTGTGGACATAAAGGAACAAAGCGGGTTGGGTAGCTTGCGCTTTTCACTTGGAAGCTGCACTTAAGGAGCTGGTGAATGAGGGTTTGATTGAGGAGGAGAAACTAGACTCCTTCAACATTCCTTTCTATGGTCCAAGTGTGGAGGAGCTAAAGATCGTAGTGGAGACGGAGGACTCGTTTGATATAAAAAGCGTGAGGACTCTGAGT

Fln Alignment:

AllPine_a_c62706___RNKAGWVACAFHLEAALKELVNEGLIEEEKLDSFNIPFYGPSVEELKIVVETEDSFDIKSVRTLS
A9NQW8________________KEQSGLGACAFHLEAAFQELVNEGLIEEEKLDSFNIPYYGPSVEELRSIVETENSFEIKSVRVLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain