SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125571

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene125571
AATGTAGTACTTTTACAATCGCGTACAAAATGTTATTTCAAAATACACAATAGAGAGACACTGGTATTCGCTCAATGAGGAGGTCGGTGGAATGAATGATGTCCTCTACCGTTTATACACATTATCGAAAAACCAGAAACATTTGGAGCTTGCACACCTGTTCGATAAGCCGTG

Ace file of the UniGene sp_v3.0_unigene125571

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1680 domain containing protein	-	-	1.0e-07	30%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	74%

Source	Gene names
Sma3	At5g12950; At5g12950/T24H18_120; At5g12960; GSVIVT00024646001; GSVIVT00024659001; OJ1225_F07.14; Os02g0195500; Os06g0612900; Os06g0613000; OsI_06226; OsI_23690; OsI_23693; OsI_23694; OsJ_05746; OsJ_21963; P0417G12.12; P0417G12.14; P0429G06.29; P0429G06.31

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Protein of unknown function DUF1680	IPR012878	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G12960.1	Putative glycosyl hydrolase of unknown function (DUF1680) chr5:4097788-4101518 FORWARD LENGTH=865	1.0e-23	72%
RefSeq	Arabidopsis thaliana	NP_196800.2	uncharacterized protein [Arabidopsis thaliana]	2.0e-23	72%
RefSeq	Populus trichocarpa	XP_002304762.1	predicted protein [Populus trichocarpa]	7.0e-22	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7JCI7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 458 aas, your sequence is shorter than subject: 57 - 593

Fln protein: M*YFYNRVQNVISKYTIERHWYSLNEEVGGMNDVLYRLYTLSKNQKHLELAHLFDKP

Protein Length: 58

Fln nts: AATGTAGTACTTTTACAATCGCGTACAAAATGTTATTTCAAAATACACAATAGAGAGACACTGGTATTCGCTCAATGAGGAGGTCGGTGGAATGAATGATGTCCTCTACCGTTTATACACATTATCGAAAAACCAGAAACATTTGGAGCTTGCACACCTGTTCGATAAGCCGTG

Fln Alignment:

AllPine_a_c62560___YFYNRVQNVISKYTIERHWYSLNEEVGGMNDVLYRLYTLSKNQKHLELAHLFDKP
G7JCI7________________YFYNRVMNVIQKFTVNRHYQSLNEEAGGMNDLLYRLYSLTRDPKHLELAHLFDKP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain