SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125390

Length: 273 nt

UniGene Fasta

>sp_v3.0_unigene125390
ACATCCATGGCCAAAGGCACAGAGATTGCCAGGTGAAAACAAGCCTGTACGCCCACCTGGTGCATTCAAGAAGAAGTCAGAACTTTCAGTGTAGATGGACATGTTTTTCTCATGGAGTATTGTGAAGAAAGGCCTCTATTATTAGGGAATGCTGGAATGGGTGCTCGTTTGTTTACATATTACCAGAAGTTAACATCTGCTGATCAAAATGCAGTTACATTGCGAAATGGATCATTGTGTGTTGGCACTGTTGTTGCAGTAGAGCCAACTGAT

Ace file of the UniGene sp_v3.0_unigene125390

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription initiation factor TFIID subunit 1 n=5 Tax=Oryza sativa RepID=TAF1_ORYSJ	-	-	3.0e-28	66%
FL-Next	sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	86%
Sma3	Transcription initiation factor TFIID, subunit TAF1	-	-	4.823e-09	-

Source	Gene names
Sma3	At1g32750; At3g19040; F6N18.13; GSVIVT00008042001; GSVIVT00018562001; GTD1; HAC13; HAF1; HAF1501; HAF1502; HAF2; HAF901; HAF902; K13E13.15; K13E13_16; Loc_Os06g43790; OJ1226_A12.6; Os06g0645700; OsI_23891; OsJ_22148; P0017B12.32; PHYPADRAFT_165727; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription factor TFIID complex	GO:0005669	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transcription cofactor activity	GO:0003712	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	histone acetylation	GO:0016573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	TAFII-230 TBP-binding	IPR009067	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32750.1	HAF01, HAF1, HAC13, GTD1, TAF1 HAC13 protein (HAC13) chr1:11846385-11856261 REVERSE LENGTH=1919	1.0e-26	65%
RefSeq	Arabidopsis thaliana	NP_174552.1	transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana]	2.0e-26	65%
RefSeq	Populus trichocarpa	XP_002309876.1	histone acetyltransferase, partial [Populus trichocarpa]	3.0e-28	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q67W65

Fln msg: Separated hits, possible frame ERROR between 91 and 94, Distance to subject end: 1009 aas, your sequence is shorter than subject: 91 - 1810

Fln protein: HPWPKAQRLPGENKPVRPPGAFKKKSELSxxDGHVFLMEYCEERPLLLGNAGMGARLFTYYQKLTSADQNAVTLRNGSLCVGTVVAVEPTD

Protein Length: 92

Fln nts: ACATCCATGGCCAAAGGCACAGAGATTGCCAGGTGAAAACAAGCCTGTACGCCCACCTGGTGCATTCAAGAAGAAGTCAGAACTTTCAGTxxxAGATGGACATGTTTTTCTCATGGAGTATTGTGAAGAAAGGCCTCTATTATTAGGGAATGCTGGAATGGGTGCTCGTTTGTTTACATATTACCAGAAGTTAACATCTGCTGATCAAAATGCAGTTACATTGCGAAATGGATCATTGTGTGTTGGCACTGTTGTTGCAGTAGAGCCAACTGAT

Fln Alignment:

AllPine_a_c62337___HPWPKAQRLPGENKPVRPPGAFKKKSELSVxDGHVFLMEYCEERPLLLGNAGMGARLFTYYQKLTSADQNAVTLRNGSLCVGTVVAVEPTD
Q67W65________________HLWPKAQRLPGENKPLRPPGAFRKKSDLSVxDGHVFLMEYCEERPLLLANAGMAARLCTYYQKTSPSDQTATSLRSNSDGLGTMLAIDPAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain