SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125355

Length: 329 nt

UniGene Fasta

>sp_v3.0_unigene125355
GCCTTGGCAGGCAGGTGGCATGACAAACAGAAGCTTAGAGAAGTGATGAAAGAGAAAACTGTAATGAAAACACCTGGACAAAGCTGGATTGAAGTCAATAACAAGGTACATTCTTTCACTGTAGGAGACAAATCGCACCCACAGACGGAGGAAATTTATTCAAAGTTGGATAGATTGTATGGGCAAATGAAGGAGATAGGGTACGTGCCTGATGCGAATTTTGTGCTGCATGATGTGGAGGAGGAGCAGAAGGAACATATTCTCTTCTACCACAGCGAGAAGCTAGCCATTGCATTTGGGCTTATCAACACGTCCGCTGGGACATCTAT

Ace file of the UniGene sp_v3.0_unigene125355

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	9.0e-39	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At2g22070; At2g27610; At3g08820; At3g49140; At3g49170; At3g57430; At4g02750; At4g33170; At5g46460; B1080A02.28; EMB2261; F10A12.28; F15K20.29; F17O14.29; F2K15.2; F2K15.30; F4I10.100; GSVIVT00000307001; GSVIVT00000887001; GSVIVT00003060001; GSVIVT00003383

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	3.0e-34	57%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	4.0e-34	57%
RefSeq	Populus trichocarpa	XP_002321443.1	predicted protein [Populus trichocarpa]	9.0e-38	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 109 - 246

Fln protein: ALAGRWHDKQKLREVMKEKTVMKTPGQSWIEVNNKVHSFTVGDKSHPQTEEIYSKLDRLYGQMKEIGYVPDANFVLHDVEEEQKEHILFYHSEKLAIAFGLINTSAGTS

Protein Length: 110

Fln nts: GCCTTGGCAGGCAGGTGGCATGACAAACAGAAGCTTAGAGAAGTGATGAAAGAGAAAACTGTAATGAAAACACCTGGACAAAGCTGGATTGAAGTCAATAACAAGGTACATTCTTTCACTGTAGGAGACAAATCGCACCCACAGACGGAGGAAATTTATTCAAAGTTGGATAGATTGTATGGGCAAATGAAGGAGATAGGGTACGTGCCTGATGCGAATTTTGTGCTGCATGATGTGGAGGAGGAGCAGAAGGAACATATTCTCTTCTACCACAGCGAGAAGCTAGCCATTGCATTTGGGCTTATCAACACGTCCGCTGGGACATCTAT

Fln Alignment:

AllPine_a_c62286___ALAGRWHDKQKLREVMKEKTVMKTPGQSWIEVNNKVHSFTVGDKSHPQTEEIYSKLDRLYGQMKEIGYVPDANFVLHDVEEEQKEHILFYHSEKLAIAFGLINTSAG
D5AAE0________________AAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain