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UniGene Name: sp_v3.0_unigene125140
Length: 238 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
 UniGene Fasta (sense)
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| >sp_v3.0_unigene125140
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Ace file of the UniGene sp_v3.0_unigene125140 (antisense)
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If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9T195_RICCO | - | - | 4.0e-27 | 83% |
| FL-Next | sp=ABC transporter G family member 39; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 76% |
| Sma3 | ATP-binding cassette transporter, putative | - | - | 1.635e-32 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Phosphonate-transporting ATPase. | EC:3.6.3.28 | - | 2.824e-22 | - |
| Sma3 | Heme-transporting ATPase. | EC:3.6.3.41 | - | 5.814e-09 | - |
| Source | Gene names |
|---|---|
| Sma3 | ABC; At1g15210; At1g15520; At1g59870; At1g66950; At2g36380; At3g16340; F1O11.1; F1O19.3; F23H11.19; F9L1.15; GSVIVT00021655001; GSVIVT00022041001; GSVIVT00022062001; GSVIVT00022064001; GSVIVT00022529001; GSVIVT00032575001; GSVIVT00034307001; GSVIVT0003431 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
| Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
| Sma3 | cadmium ion transmembrane transporter activity | GO:0015086 | Molecular Function | 0.0 | - |
| Sma3 | ATPase activity | GO:0016887 | Molecular Function | 0.0 | - |
| Sma3 | transport | GO:0006810 | Biological Process | 0.0 | - |
| Sma3 | defense response | GO:0006952 | Biological Process | 0.0 | - |
| Sma3 | response to biotic stimulus | GO:0009607 | Biological Process | 0.0 | - |
| Sma3 | systemic acquired resistance | GO:0009627 | Biological Process | 0.0 | - |
| Sma3 | response to ethylene stimulus | GO:0009723 | Biological Process | 0.0 | - |
| Sma3 | response to salicylic acid stimulus | GO:0009751 | Biological Process | 0.0 | - |
| Sma3 | response to jasmonic acid stimulus | GO:0009753 | Biological Process | 0.0 | - |
| Sma3 | defense response to fungus, incompatible interaction | GO:0009817 | Biological Process | 0.0 | - |
| Sma3 | response to ozone | GO:0010193 | Biological Process | 0.0 | - |
| Sma3 | cadmium ion transport | GO:0015691 | Biological Process | 0.0 | - |
| Sma3 | lead ion transport | GO:0015692 | Biological Process | 0.0 | - |
| Sma3 | negative regulation of defense response | GO:0031348 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ribosomal protein L11 | IPR000911 | - | 0.0 | - |
| Sma3 | ABC transporter-like | IPR003439 | - | 0.0 | - |
| Sma3 | AAA+ ATPase domain | IPR003593 | - | 0.0 | - |
| Sma3 | Pleiotropic drug resistance protein PDR | IPR005285 | - | 0.0 | - |
| Sma3 | Phosphopantetheine attachment site | IPR006162 | - | 0.0 | - |
| Sma3 | ABC-2 type transporter | IPR013525 | - | 0.0 | - |
| Sma3 | Plant PDR ABC transporter associated | IPR013581 | - | 0.0 | - |
| Sma3 | ABC transporter, conserved site | IPR017871 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G66950.1 | PDR11, ATPDR11 pleiotropic drug resistance 11 chr1:24978239-24984461 FORWARD LENGTH=1454 | 5.0e-27 | 76% |
| RefSeq | Arabidopsis thaliana | NP_176867.2 | ABC transporter G family member 39 [Arabidopsis thaliana] | 7.0e-27 | 76% |
| RefSeq | Populus trichocarpa | XP_002326416.1 | predicted protein [Populus trichocarpa] | 3.0e-29 | 83% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q7PC84
Fln msg: Separated hits, possible frame ERROR between 168 and 174, Distance to subject end: 788 aas, your sequence is shorter than subject: 79 - 1454
Fln protein:
S
Protein Length:
80
Fln nts:
A
Fln Alignment:
AllPine_a_c62009___SLVNVMFNGMAELAMTVVRLPVYYKQRDLLFYPAWAFSLPIWVLRIPLSFLESGIWxxLTYYVVDFAPSASRFFRQFL
Q7PC84________________SLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWxxLTYYTIGFAPSAARFFRQLL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
