SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125076

Length: 286 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene125076
GCTTTTACAATTCCTTCATTTGAGTTTCGTTCCCCAGCAGAACTGCCATTGTATCTACAACTTGGGATCCTATCTGGTTTAGTTTCAGTTGTCTTGTCTAAGACCACAGCAATTGCTGTGAAAGCTTCCAACACTCTATTGGAAATCACAGGAGTTCGAGCTGCATTACTGCCTTCTTTAGGGGGCATATCTGTAGGTTTAATAGCACTAGCATATCCCGAAGTTCTTTACTGGGGATTTGAGAATGTTGATATACTGTTGGAATCACAACCATTTCAGAAACATT

Ace file of the UniGene sp_v3.0_unigene125076 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CLC-e chloride channel protein [Arabidopsis thaliana]	-	-	2.0e-20	52%
FL-Next	sp=Chloride channel protein CLC-e; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	Gene names
Sma3	At4g35440; CLC-E; F15J1.10; F23E12.10; GSVIVT00036320001; Os01g0704700; OsI_03432; OsJ_03174; PHYPADRAFT_136942; POPTRDRAFT_595045; RCOM_1563600; VITISV_002674;

Source	GOs	Term	Type	Identity
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	voltage-gated chloride channel activity	GO:0005247	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chloride transport	GO:0006821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35440.2	CLC-E chloride channel E chr4:16836367-16839345 REVERSE LENGTH=749	1.0e-25	58%
RefSeq	Arabidopsis thaliana	NP_567985.1	chloride channel protein CLC-e [Arabidopsis thaliana]	2.0e-25	58%
RefSeq	Populus trichocarpa	XP_002300594.1	Cl-channel clc-3 [Populus trichocarpa]	1.0e-16	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GX93

Fln msg: Distance to subject end: 331 aas, your sequence is shorter than subject: 95 - 710

Fln protein: AFTIPSFEFRSPAELPLYLQLGILSGLVSVVLSKTTAIAVKASNTLLEITGVRAALLPSLGGISVGLIALAYPEVLYWGFENVDILLESQPFQKH

Protein Length: 96

Fln nts: GCTTTTACAATTCCTTCATTTGAGTTTCGTTCCCCAGCAGAACTGCCATTGTATCTACAACTTGGGATCCTATCTGGTTTAGTTTCAGTTGTCTTGTCTAAGACCACAGCAATTGCTGTGAAAGCTTCCAACACTCTATTGGAAATCACAGGAGTTCGAGCTGCATTACTGCCTTCTTTAGGGGGCATATCTGTAGGTTTAATAGCACTAGCATATCCCGAAGTTCTTTACTGGGGATTTGAGAATGTTGATATACTGTTGGAATCACAACCATTTCAGAAACATT

Fln Alignment:

AllPine_a_c61921___AFTIPSFEFRSPAELPLYLQLGIXXXXXXXXXSKTTAIAVKASNTLLEITGVRAALLPSLGGISVGLIALAYPEVLYWGFENVDILLESQPFQK
Q8GX93________________AFKVPDYDFRSPGELPLYLLLGALCGLVSLALSRCTSSMTSAVDSLNKDAGIPKAVFPVMGGLSVGIIALVYPEVLYWGFQNVDILLEKRPFVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain