SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125052

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene125052
AATGTGCTGTGATAGGGGTGTTGTCCATTCCCCGTCTTAAGCCTCGACAATGGCTGATCTTTGACCTAAGGAAAACTGACTGGAGAGGATACTTCAACAGCCTCTTCTGGAATCTGAATTACTGGGATAAAGCCAGTACCTTGGCTGGGGAGTGGAATCTCCAAGCAAGAACTTTCCAAAGGCTCTTATGTTTGCAATGTTGATAGGTGGTGCCTGGCTGAAATGGTGATTCAGGCAGCAGCAGCAA

Ace file of the UniGene sp_v3.0_unigene125052

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Neutral amino acid transport protein (Fragment) n=2 Tax=Malpighiales RepID=B9NJB2_POPTR	-	-	1.0e-18	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	Gene names
Sma3	GSVIVT00001446001; POPTRDRAFT_202043; POPTRDRAFT_280035; POPTRDRAFT_642081; PTRLAT6; PtrLAT5; PtrLAT7; RCOM_0174790;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid/polyamine transporter I	IPR002293	-	0.0	-
Sma3	Amino acid permease domain	IPR004841	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19553.1	Amino acid permease family protein chr3:6790988-6792507 REVERSE LENGTH=479	1.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_188589.1	Amino acid permease family protein [Arabidopsis thaliana]	1.0e-20	55%
RefSeq	Populus trichocarpa	XP_002335345.1	neutral amino acid transport protein, partial [Populus trichocarpa]	2.0e-24	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 238 aas, your sequence is shorter than subject: 67 - 502

Fln protein: CAVIGVLSIPRLKPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEWNLQARTFQRLLCLQC*

Protein Length: 68

Fln nts: AATGTGCTGTGATAGGGGTGTTGTCCATTCCCCGTCTTAAGCCTCGACAATGGCTGATCTTTGACCTAAGGAAAACTGACTGGAGAGGATACTTCAACAGCCTCTTCTGGAATCTGAATTACTGGGATAAAGCCAGTACCTTGGCTGGGGAGTGGAATCTCCAAGCAAGAACTTTCCAAAGGCTCTTATGTTTGCAATGTTGATAGGTGGTGCCTGGCTGAAATGGTGATTCAGGCAGCAGCAGCAA

Fln Alignment:

AllPine_a_c61892___AVIGVLSIPRLKPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEWNLQARTFQRLLCL
B8LPK8________________AVMGVLSIPHLRPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEVESPSKTFPKALML

SSRs (tot: 1)

Start position	End position	Sequence	Length
235	246	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain