SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125050

Length: 466 nt

UniGene Fasta

>sp_v3.0_unigene125050
AATGTAGAATGGGTCTGGAAACTATACGAAACCAACGAGGTTTTAGAAATGGTGGACGAAAGCATGGGAGATGAGTACGATAAGGAGGAAGTGTTGAGAATGATACAGCTGGGTCTGCTATGCACCCAAGCTTCTGTTGCACAAAGGCCGTCCATGTCTGAGATAGTGGCAATGCTGGTAAGCAAGAGGGACATTAATAATTTGCAGGCGACACCCATGAAGCCCGCTTTAGGATATACAGTGCGGACTACCAATTCTGAATCTGGCACGTCTTCATCGGCTTCGAATGCAACAGTGTCAACATCCCTCACTGCTCGTTAAATATAATTACAGATAAACAGCATTAATAGTTTCCTACCAAACTATTTTCATGCATTTTAGACATTCCGCAATGTAACGATTTTACAATCATACAATTCACATATTGAAAACTTGAGTTGTGTAAAATATTATGCGAAAATACATT

Ace file of the UniGene sp_v3.0_unigene125050

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Oryza sativa Japonica Group]	-	-	5.0e-14	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56120.1	Leucine-rich repeat transmembrane protein kinase chr1:20987288-20993072 REVERSE LENGTH=1047	1.0e-14	46%
RefSeq	Arabidopsis thaliana	NP_176008.4	Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	2.0e-14	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: your sequence is shorter than subject: 107 - 245

Fln protein: NVEWVWKLYETNEVLEMVDESMGDEYDKEEVLRMIQLGLLCTQASVAQRPSMSEIVAMLVSKRDINNLQATPMKPALGYTVRTTNSESGTSSSASNATVSTSLTAR*

Protein Length: 108

Fln nts: AATGTAGAATGGGTCTGGAAACTATACGAAACCAACGAGGTTTTAGAAATGGTGGACGAAAGCATGGGAGATGAGTACGATAAGGAGGAAGTGTTGAGAATGATACAGCTGGGTCTGCTATGCACCCAAGCTTCTGTTGCACAAAGGCCGTCCATGTCTGAGATAGTGGCAATGCTGGTAAGCAAGAGGGACATTAATAATTTGCAGGCGACACCCATGAAGCCCGCTTTAGGATATACAGTGCGGACTACCAATTCTGAATCTGGCACGTCTTCATCGGCTTCGAATGCAACAGTGTCAACATCCCTCACTGCTCGTTAA___ATATAATTACAGATAAACAGCATTAATAGTTTCCTACCAAACTATTTTCATGCATTTTAGACATTCCGCAATGTAACGATTTTACAATCATACAATTCACATATTGAAAACTTGAGTTGTGTAAAATATTATGCGAAAATACATT

Fln Alignment:

AllPine_a_c61889___VEWVWKLYETNEVLEMVDESMGDEYDKEEVLRMIQLGLLCTQASVAQRPSMSEIVAMLVSKRDINNLQATPMKPA
B8LLL8________________LEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSEIT---VQPTQPA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain