SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125019

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene125019
CAGAATCAGTCAAGCAGGTTATCGTTGATGTGAAAGTTGGTCCCCCTCATTTTCAACAGGGGCTTGCAGCAGAATTACTTTCAGTTATCAATAGGACTCAATGCAGAAATTGCATTATATGGGCTAAACTAGACACGTTGGGGAGAGAATTGATGCAGCTATCCCGTGACATAATGGTGGGATATATTGTTATGAAAGATCCTATAACTGGAATTCAAAGTGATTTGCTACGACATT

Ace file of the UniGene sp_v3.0_unigene125019

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycerophosphodiester phosphodiesterase domain-containing protein n=2 Tax=Arabidopsis RepID=F4I8H8_ARATH	-	-	3.0e-20	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	At1g71340; At1g71340/F3I17.1; F3I17.1; GSVIVT00032004001; LOC_Os11g12800; Os11g0236000; OsI_35636; OsJ_33468; POPTRDRAFT_894645; RCOM_1329270; VITISV_030223;

Source	GOs	Term	Type	Identity
Sma3	glycerophosphodiester phosphodiesterase activity	GO:0008889	Molecular Function	-
Sma3	glycerol metabolic process	GO:0006071	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	0.0	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G71340.1	PLC-like phosphodiesterases superfamily protein chr1:26885556-26887321 REVERSE LENGTH=328	5.0e-27	57%
RefSeq	Arabidopsis thaliana	NP_177290.3	glycerophosphodiester phosphodiesterase domain-containing protein [Arabidopsis thaliana]	7.0e-27	57%
RefSeq	Populus trichocarpa	XP_002319321.1	predicted protein [Populus trichocarpa]	3.0e-26	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQV1

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 78 - 185

Fln protein: ESVKQVIVDVKVGPPHFQQGLAAELLSVINRTQCRNCIIWAKLDTLGRELMQLSRDIMVGYIVMKDPITGIQSDLLRH

Protein Length: 79

Fln nts: CAGAATCAGTCAAGCAGGTTATCGTTGATGTGAAAGTTGGTCCCCCTCATTTTCAACAGGGGCTTGCAGCAGAATTACTTTCAGTTATCAATAGGACTCAATGCAGAAATTGCATTATATGGGCTAAACTAGACACGTTGGGGAGAGAATTGATGCAGCTATCCCGTGACATAATGGTGGGATATATTGTTATGAAAGATCCTATAACTGGAATTCAAAGTGATTTGCTACGACATT

Fln Alignment:

AllPine_a_c61850___ESVKQVIVDVKVGPPHFQQGLAAELLSVINRTQCRNCIIWAKLDTLGRELMQLSRDIMVGYIVMKDPITGIQSDLLR
B8LQV1________________ESVKQVIVDVKVGPPYFQQGLAADLLSVINKTECRNCIIWAKLDTLGRELKQLSHDIMVGYIVMKDPITGIQSDLLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain