SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124929

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene124929
CAGAAACAACAAGGCTGCCTGAAGTGCAGGATTTTGTGTGGGTAACTGGCCATGGTGTTAGGGCTGTAGTTCACAACAAGAATATTCTTGTGGGTAACATTAAGCTGATGTTAGATTCCGGAATCTCTGTTTCTGAAGATGCCTATGACATTTTGAATGAGGCTGAGGGGATGGCTCGAACGGCGGTTTTTGTGTCTATTGACAGAGAGTTGGTTGCAATTATCACAATATCAGATTCAGTTAGGCCAGAAGCAAAGGAGGTGGTGTCTATTTTGAAATTGATGAAAATTAAATGCATTATGGTCACAGGAGACAACTGGAGTACTGCAAAAGCCATTGCCAAGGACGTTGGAATTGAGACTGTCCATGC

Ace file of the UniGene sp_v3.0_unigene124929

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heavy metal ATPase n=1 Tax=Populus trichocarpa RepID=B9GWH1_POPTR	-	-	3.0e-34	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Heavy metal ATPase	-	-	2.715e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Copper-exporting ATPase.	EC:3.6.3.4	-	1.53e-09	-

Source	Gene names
Sma3	At1g63440; F2K11.18; GSVIVT00000399001; GSVIVT00000403001; GSVIVT00000405001; HMA5; OSJNBb0012E24.8; Os04g0556000; OsI_16937; OsJ_15734; POPTRDRAFT_547880; POPTRDRAFT_554346; POPTRDRAFT_712519; POPTRDRAFT_751336; RCOM_1686400; RCOM_1686410; SB20O07.23; SB

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	copper-exporting ATPase activity	GO:0004008	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	copper ion transport	GO:0006825	Biological Process	-
Sma3	detoxification of copper ion	GO:0010273	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63440.1	HMA5 heavy metal atpase 5 chr1:23527655-23531109 FORWARD LENGTH=995	2.0e-33	48%
RefSeq	Arabidopsis thaliana	NP_176533.1	Cu2+-exporting ATPase [Arabidopsis thaliana]	2.0e-33	48%
RefSeq	Populus trichocarpa	XP_002303580.1	heavy metal ATPase [Populus trichocarpa]	3.00004e-41	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 122 - 998

Fln protein: ETTRLPEVQDFVWVTGHGVRAVVHNKNILVGNIKLMLDSGISVSEDAYDILNEAEGMARTAVFVSIDRELVAIITISDSVRPEAKEVVSILKLMKIKCIMVTGDNWSTAKAIAKDVGIETVH

Protein Length: 123

Fln nts: CAGAAACAACAAGGCTGCCTGAAGTGCAGGATTTTGTGTGGGTAACTGGCCATGGTGTTAGGGCTGTAGTTCACAACAAGAATATTCTTGTGGGTAACATTAAGCTGATGTTAGATTCCGGAATCTCTGTTTCTGAAGATGCCTATGACATTTTGAATGAGGCTGAGGGGATGGCTCGAACGGCGGTTTTTGTGTCTATTGACAGAGAGTTGGTTGCAATTATCACAATATCAGATTCAGTTAGGCCAGAAGCAAAGGAGGTGGTGTCTATTTTGAAATTGATGAAAATTAAATGCATTATGGTCACAGGAGACAACTGGAGTACTGCAAAAGCCATTGCCAAGGACGTTGGAATTGAGACTGTCCATGC

Fln Alignment:

AllPine_a_c61739___TTRLPEVQDFVWVTGHGVRAVVHNKNILVGNIKLMLDSGISVSEDAYDILNEAEGMARTAVFVSIDRELVAIITISDSVRPEAKEVVSILKLMKIKCIMVTGDNWSTAKAIAKDVGIETV
B8LQ20________________TAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDGVFIPSVAEEYLKDMEQHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIEDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain