SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124843

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene124843
AATGTCATAGATCTCTCACGCCAATTGTTGACAGAATGCCTGAGAGAAACGTGGTTTCATGGAGTGCAATGATTGCGAGATATGCCCAGAATGGGAATTCAAATGAAGCCTTGAGACTCTTTCAGGAAATGCAACTGGTAGGGTGAAACCTGACTTGGTTACTGTGATGAGTGTGCTCCCGGCATGTGCCCATTTAGCTGCTCTGCAACAAGGCAGAGACATCCATGATTATAT

Ace file of the UniGene sp_v3.0_unigene124843

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9STF3.1\|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46790, chloroplastic; AltName: Full=Protein CHLORORESPIRATORY REDUCTION 2; Flags: Precursor emb\|CAB511	-	-	9.0e-11	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Protein CHLORORESPIRATORY REDUCTION 2	-	-	7.31e-06	-

Source	Gene names
Sma3	At3g46790; CRR2; PCMP-H54; T6H20.180;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G46790.1	CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:17231975-17233948 REVERSE LENGTH=657	6.0e-13	75%
RefSeq	Arabidopsis thaliana	NP_190263.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-13	75%
RefSeq	Populus trichocarpa	XP_002313416.1	predicted protein [Populus trichocarpa]	1.0e-13	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 376 aas, your sequence is shorter than subject: 77 - 795

Fln protein: CHRSLTPIVDRMPERNVVSWSAMIARYAQNGNSNEALRLFQEMQLVxxKPDLVTVMSVLPACAHLAALQQGRDIHDY

Protein Length: 78

Fln nts: AATGTCATAGATCTCTCACGCCAATTGTTGACAGAATGCCTGAGAGAAACGTGGTTTCATGGAGTGCAATGATTGCGAGATATGCCCAGAATGGGAATTCAAATGAAGCCTTGAGACTCTTTCAGGAAATGCAACTGGTAxxxxxxAAACCTGACTTGGTTACTGTGATGAGTGTGCTCCCGGCATGTGCCCATTTAGCTGCTCTGCAACAAGGCAGAGACATCCATGATTATAT

Fln Alignment:

AllPine_a_c61634___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
B8LQA8________________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain