SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124781

Length: 167 nt

UniGene Fasta

>sp_v3.0_unigene124781
AATGTATGCCATTTGAATCTAATGCGTTAGTGTGGCGTACCTTGCTTGGTGCCTGCAGAGTTCATTATAATTTGGATCTAGGAAAACGTGCAGCAGAGTGCATACTAGCATTGGAACCAGAAGACACTGCTACTTACGTGCTTTTGTCAAATATTTATGCTGTTCTT

Ace file of the UniGene sp_v3.0_unigene124781

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SVP7.2\|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gb\|AEE83309.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	1.0e-12	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At3g49170; At4g13650; EMB2261; F18A5.40; F2K15.30; GSVIVT00003060001; GSVIVT00006516001; GSVIVT00007922001; GSVIVT00011403001; GSVIVT00013634001; GSVIVT00014293001; GSVIVT00025485001; GSVIVT00029397001; GSVIVT00036292001; GSVIVT00038113001; OJ1651_D06.13;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:7939611-7942898 REVERSE LENGTH=1064	4.0e-17	66%
RefSeq	Arabidopsis thaliana	NP_193101.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-17	66%
RefSeq	Populus trichocarpa	XP_002305120.1	predicted protein [Populus trichocarpa]	5.0e-18	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 55 - 246

Fln protein: CMPFESNALVWRTLLGACRVHYNLDLGKRAAECILALEPEDTATYVLLSNIYAVL

Protein Length: 56

Fln nts: AATGTATGCCATTTGAATCTAATGCGTTAGTGTGGCGTACCTTGCTTGGTGCCTGCAGAGTTCATTATAATTTGGATCTAGGAAAACGTGCAGCAGAGTGCATACTAGCATTGGAACCAGAAGACACTGCTACTTACGTGCTTTTGTCAAATATTTATGCTGTTCTT

Fln Alignment:

AllPine_a_c61549___MPFESNALVWRTLLGACRVHYNLDLGKRAAECILALEPEDTATYVLLSNIYA
D5AAE0________________IPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain