SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124731

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene124731
CGTCGTGACCTTGGCTGTCTGAAATTAGTCCTTGCATAAGATCAAGCTTGAGATTTATGGGTGCACTAGAACCTTCAGAAATTTGTGCTGTATTTTTCCTTTGTGAGTGGGCAACATGTGATTTCAGAAGTTGCCGAGTCTCTCTGCCTGTAGGTGGAAAAATTACTGGCAAAAGGGACTTCTCCCGTGTTTATATGGCAGTTTCAATCATGAAAATAAGTTGGAATCAATTCGAAAGAA

Ace file of the UniGene sp_v3.0_unigene124731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to 2-oxo acid dehydrogenase, lipoyl-binding site n=1 Tax=Vitis vinifera RepID=UPI0001984EDC	-	-	4.0e-18	53%
FL-Next	sp=Mediator of RNA polymerase II transcription subunit 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	Putative uncharacterized protein OSJNBa0082M15.26	-	-	4.873e-06	-

Source	Gene names
Sma3	LOC_Os10g40260; OSJNBa0082M15.26; OsI_27117; OsJ_25372; OsJ_32377;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00450.1	CRP, CCT RNA polymerase II transcription mediators chr4:202425-210666 FORWARD LENGTH=2253	9.0e-21	50%
RefSeq	Arabidopsis thaliana	NP_191955.5	RNA polymerase II transcription mediator [Arabidopsis thaliana]	1.0e-20	50%
RefSeq	Populus trichocarpa	XP_002334938.1	predicted protein, partial [Populus trichocarpa]	7.0e-20	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: H3K2Y6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1624 aas, your sequence is shorter than subject: 79 - 2235

Fln protein: S*PWLSEISPCIRSSLRFMGALEPSEICAVFFLCEWATCDFRSCRVSLPVGGKITGKRDFSRVYMAVSIMKISWNQFER

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCTGAAATTAGTCCTTGCATAAGATCAAGCTTGAGATTTATGGGTGCACTAGAACCTTCAGAAATTTGTGCTGTATTTTTCCTTTGTGAGTGGGCAACATGTGATTTCAGAAGTTGCCGAGTCTCTCTGCCTGTAGGTGGAAAAATTACTGGCAAAAGGGACTTCTCCCGTGTTTATATGGCAGTTTCAATCATGAAAATAAGTTGGAATCAATTCGAAAGAA

Fln Alignment:

AllPine_a_c61488___WLSEISPCIRSSLRFMGALEPSEICAVFFLCEWATCDFRSCRVSLPVGGKITGKRDFSRVYMAVSIMK
H3K2Y6________________WITDVSPCLRSSLRWIGAISTSFVCSVFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYLVIQLLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain