SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124482

Length: 280 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene124482
GGAGGTGGAGCTAATGGGAGTGTCATCCATTACAGTCGAAATGACCAACAGATCAAAGATGGAGAGATGGTTTTGATGGATGTTGGATGTGAAGTCAATGGCTATGTCAGTGACCTGACTCGGACATGGCCTCCTTGTGGTAGCTATTCTCCTTGTCAACGAGAGCTGTAACAGCTCATCTTGGACACTGCTAATGAATGTTTGAAGCTGTGTAAACCAGGAGTGAGTCTGCGCCAAATACATTCGTATTCTGTCCAGCTATTATCCAAAGGTCTACATT

Ace file of the UniGene sp_v3.0_unigene124482 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to gi\|1573829 HI0816 aminopeptidase P homolog (pepP) from Haemophilus influenzae genome gb\|U32764 [Arabidopsis thaliana]	-	-	2.0e-32	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	Gene names
Sma3	At1g09300/T31J12_2; GSVIVT00022580001; LOC_Os12g37640; Os12g0563500; OsI_38740; OsJ_13234; PHYPADRAFT_131941; POPTRDRAFT_570698; RCOM_1435660; T31J12.2; VITISV_026715;

Source	GOs	Term	Type	Identity
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	metalloexopeptidase activity	GO:0008235	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cellular process	GO:0009987	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Aminopeptidase P N-terminal domain	IPR007865	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09300.1	Metallopeptidase M24 family protein chr1:3003981-3008131 FORWARD LENGTH=493	9.99995e-41	67%
RefSeq	Arabidopsis thaliana	NP_001117254.1	metallopeptidase M24-like protein [Arabidopsis thaliana]	9.99995e-41	67%
RefSeq	Populus trichocarpa	XP_002319477.1	predicted protein [Populus trichocarpa]	3.9937e-43	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUB9

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 93 - 497

Fln protein: GGGANGSVIHYSRNDQQIKDGEMVLMDVGCEVNGYVSDLTRTWPPCGSYSPCQREL*QLILDTANECLKLCKPGVSLRQIHSYSVQLLSKGLH

Protein Length: 94

Fln nts: GGAGGTGGAGCTAATGGGAGTGTCATCCATTACAGTCGAAATGACCAACAGATCAAAGATGGAGAGATGGTTTTGATGGATGTTGGATGTGAAGTCAATGGCTATGTCAGTGACCTGACTCGGACATGGCCTCCTTGTGGTAGCTATTCTCCTTGTCAACGAGAGCTGTAACAGCTCATCTTGGACACTGCTAATGAATGTTTGAAGCTGTGTAAACCAGGAGTGAGTCTGCGCCAAATACATTCGTATTCTGTCCAGCTATTATCCAAAGGTCTACATT

Fln Alignment:

AllPine_a_c61183___GANGSVIHYSR----NDQQIKDGEMVLMDVGCEVNGYVSDLTRTWPPCGSYSPCQREL*QLILDTANECLKLCKPGVSLRQIHSYSVQLLSKGL
A9NUB9________________GENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLGAHEAVISKMKPGVSWVDMHKLAESVIITSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain