SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124460

Length: 265 nt

UniGene Fasta

>sp_v3.0_unigene124460
GACTAATAAAGTGGATGTGGAGGACCTGACGGTGGAGAACGGGCTTTTTAAGTCATTTCATGTATTGTGAGGCAGCAGTTGGACTCAATATGGCATATCATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAGGACATTGAGGAAACTGTTAGATTACTTGGTTCGGTATGATGCCGTGACTTACTTGAAGTACTTGGATGCATTGAGGGTCTCTGAGGGGATGAGATCGGTTTGGATTTTTGCTGGCCCTAGCCACAGGG

Ace file of the UniGene sp_v3.0_unigene124460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5' repair endonuclease [Arabidopsis thaliana]	-	-	9.0e-27	71%
FL-Next	sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	89%
Sma3	Ultraviolet hypersensitive 1	-	-	3.343e-09	-

Source	Gene names
Sma3	At5g41150; GSVIVT00010719001; LOC_Os03g01100; MEE6.22; MICPUCDRAFT_57886; OSTLU_42450; Os03g0100400; OsI_09607; OsJ_09049; PHYPADRAFT_201653; POPTRDRAFT_589928; RAD1; UVH; UVH1; VITISV_025993;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	DNA metabolic process	GO:0006259	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-
Sma3	ERCC4 domain	IPR006166	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G41150.1	UVH1, ATRAD1, RAD1 Restriction endonuclease, type II-like superfamily protein chr5:16473044-16476919 REVERSE LENGTH=956	6.0e-29	71%
RefSeq	Arabidopsis thaliana	NP_198931.1	DNA repair endonuclease UVH1 [Arabidopsis thaliana]	8.0e-29	71%
RefSeq	Populus trichocarpa	XP_002326681.1	predicted protein [Populus trichocarpa]	5.0e-31	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LKI5

Fln msg: Separated hits, possible frame ERROR between 58 and 64, Distance to subject end: 636 aas, your sequence is shorter than subject: 88 - 956

Fln protein: TNKVDVEDLTVENGLFKSxxxIVRQQLDSIWHIIGRKTKQLVGDLRTLRKLLDYLVRYDAVTYLKYLDALRVSEGMRSVWIFAGPSHR

Protein Length: 89

Fln nts: GACTAATAAAGTGGATGTGGAGGACCTGACGGTGGAGAACGGGCTTTTTAAGTCATTxxxxxxTATTGTGAGGCAGCAGTTGGACTCAATATGGCATATCATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAGGACATTGAGGAAACTGTTAGATTACTTGGTTCGGTATGATGCCGTGACTTACTTGAAGTACTTGGATGCATTGAGGGTCTCTGAGGGGATGAGATCGGTTTGGATTTTTGCTGGCCCTAGCCACAGGG

Fln Alignment:

AllPine_a_c61159___TNKVDVEDLTVENGLFKSFxxIVRQQLDSIWHIIGRKTKQLVGDLRTLRKLLDYLVRYDAVTYLKYLDALRVSEGMRSVWIFAGPSHR
Q9LKI5________________TNKVDVDDLTVESGLFKSFxxIVRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLDTLRVSESYRSVWLFAESSYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain