SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124057

Length: 344 nt

UniGene Fasta

>sp_v3.0_unigene124057
AGGTTCCGAATGTTGAAGTGAATGCTCTTATGAGGACCCTTGACGCAAAGCCTCTGTTGTTCCTTTAGCAGGTTCATTGAAAGCAGTTTTCAATTGTCAAGGCCCATTGGATATTCCTGTATTTGTAGGTGGTGGCATAATGTCAAAGAAAAACTGTCATTTCATATCAAATATTCCTTCCTCTGCTGCGGCTGAAGCAGTCGTGCGAAACAAGGAGTTTGGGGCAGTAGCAGCTATAGGTCATGTGCCATTCTCATATGTGTCAGCCAATTTTACTTTCAACACTGATAGTCGCGTCACAGATGTGTATGGCATTCGAGCAACACTTACAGATGGTGGTGAAA

Ace file of the UniGene sp_v3.0_unigene124057

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EMB2410 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LBF6_ARALL	-	-	2.0e-31	65%
FL-Next	tr=Putative uncharacterized protein Sb03g003800; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	75%
Sma3	Putative uncharacterized protein At2g25660	-	-	7.797e-06	-

Source	Gene names
Sma3	At2g25660; GSVIVT00032534001; OsI_00642; OsJ_00611; RCOM_0804300;

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF490	IPR007452	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25660.1	emb2410 embryo defective 2410 chr2:10916456-10927390 REVERSE LENGTH=2166	1.0e-34	65%
RefSeq	Arabidopsis thaliana	NP_180137.3	embryo defective 2410 protein [Arabidopsis thaliana]	2.0e-34	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XMQ2

Fln msg: Overlapping hits, possible frame ERROR between 62 and 47, Distance to subject end: 1308 aas, your sequence is shorter than subject: 114 - 2190

Fln protein: VPNVEVNALMRTLDxxxxxxxLAGSLKAVFNCQGPLDIPVFVGGGIMSKKNCHFISNIPSSAAAEAVVRNKEFGAVAAIGHVPFSYVSANFTFNTDSRVTDVYGIRATLTDGGE

Protein Length: 115

Fln nts: AGGTTCCGAATGTTGAAGTGAATGCTCTTATGAGGACCCTTGACxxxxxxxxxxxxxxxxxxxxxTTAGCAGGTTCATTGAAAGCAGTTTTCAATTGTCAAGGCCCATTGGATATTCCTGTATTTGTAGGTGGTGGCATAATGTCAAAGAAAAACTGTCATTTCATATCAAATATTCCTTCCTCTGCTGCGGCTGAAGCAGTCGTGCGAAACAAGGAGTTTGGGGCAGTAGCAGCTATAGGTCATGTGCCATTCTCATATGTGTCAGCCAATTTTACTTTCAACACTGATAGTCGCGTCACAGATGTGTATGGCATTCGAGCAACACTTACAGATGGTGGTGAAA

Fln Alignment:

AllPine_a_c60568___VPNVEVNALMRTLDAxxxxxPLAGSLKAVFNCQGPLDIPVFVGGGIMSKKNCHFISNIPSSAAAEAVVRNKEFGAVAAIGHVPFSYVSANFTFNTDSRVTDVYGIRATLTDGGE
C5XMQ2________________VPSVEVNALMRTMKMxxxxxPLAGSVTAVFNCQGPLDAPVFVGSGIVSRKSFS-VSGMPPSAASEAVMQNKEAGAVAAFDHIPFSHVSANFTFNLDNSVADLYGIRACLLDGGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain