SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124054

Length: 1870 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene124054 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MYB transcription factor [Arabidopsis thaliana]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G01140.1	MYB106, NOK, AtMYB106 myb domain protein 106 chr3:46619-48143 REVERSE LENGTH=388	85%
RefSeq	Arabidopsis thaliana	NP_186763.2	myb domain protein 106 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002323871.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0V4

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 452 - 330

Fln protein: ANFDRVKYKAGLLRCGKSCRLRWANYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLLQMGIDPVTHKPKSESIMAPGVQSSNGSSNLSHMAQWESARLEAESRLARESKLRARGLWSAQLRNVNASSDLFSRLRRASPGFESDREESKIPGLSSALGFDCMKMTQKWDKFQDLRSGTKLDQCNLSALGGSLGSYSPLENENRASKTSYLGLLQQAMCPSAQGSKILFNEAKKLVESQKNRQTNATATLHWSTYHIDQSENCDEKKPNIVSEKAHSDDQSCSHEENVEPADSHHELLLSSVMLNDGNCSSARSDVSELTKTEQGADASYDKVGNSDNILSEFQHIHYDEISSSGGLKSGSSYDGFNADMLLDLVVTPPNGYSTAGCGDNRSLSGLSVDDNKEYWSNMFSVCNSLPNGNHSGVQGIF*

Protein Length: 453

Fln nts: GCTGGTCATTATGATTTTATATTTAGGATTTTTGTTGGTATTTTTTCATAAGGAGCGCTTCATCTATTCATCCTCAATGCAAAATCCCATGAAAATAGATTTTAGGTTTAACTTGGAAAAATAACTCAGTAAGCTAATTTTGATAGAGTGAAGTACAAAGCTGGGTTGCTGAGATGCGGGAAGAGCTGCAGATTGCGCTGGGCTAACTATCTAAGGCCAGATATCAAGCGGGGAAAGTTCACTGTGCAGGAAGAGCAGACTATTATTCAACTTCATGCGCTACTGGGAAACAGGTGGTCCGCCATTGCTACTCACCTTCCCAAGCGAACCGACAACGAAATCAAGAACTACTGGAATACCCACCTGAAGAAGCGCTTGCTGCAGATGGGAATCGACCCCGTGACGCACAAGCCCAAGTCCGAATCGATTATGGCACCTGGTGTTCAGTCGTCCAATGGGTCCTCGAATCTGAGCCATATGGCGCAGTGGGAGAGCGCGCGCCTGGAAGCCGAATCGAGGCTGGCGCGCGAGTCCAAGCTCAGGGCCAGGGGCCTCTGGTCTGCCCAGTTGAGAAACGTTAATGCGAGCTCGGATTTATTCAGCCGATTGCGGAGAGCCAGTCCAGGGTTCGAATCCGATAGAGAGGAATCAAAGATTCCCGGGTTGAGCTCTGCTCTGGGCTTTGATTGTATGAAAATGACACAGAAATGGGACAAGTTCCAGGATTTGAGGTCGGGAACCAAGTTAGACCAGTGCAATTTGTCAGCCTTGGGAGGTTCACTGGGTAGTTATAGTCCACTGGAGAATGAGAACCGAGCTAGTAAGACGAGCTATTTGGGCCTTCTGCAGCAAGCTATGTGCCCTTCTGCTCAGGGCAGCAAAATTCTGTTTAATGAGGCCAAGAAGTTGGTCGAGAGCCAAAAGAACCGACAGACTAATGCAACGGCCACACTTCACTGGTCTACTTATCACATAGACCAGTCTGAGAATTGTGATGAGAAGAAACCGAATATAGTTTCTGAGAAAGCTCACAGCGATGATCAGAGCTGCAGCCATGAAGAAAATGTCGAGCCAGCCGATAGCCATCACGAGCTTTTGCTGTCCTCTGTTATGTTAAATGACGGGAATTGCTCCAGTGCGAGGTCAGACGTGTCTGAGCTCACCAAAACCGAACAGGGAGCTGATGCCAGTTATGATAAAGTCGGAAATTCTGATAATATCCTCAGCGAGTTTCAACATATTCATTATGATGAAATTAGCAGCAGTGGTGGCCTCAAGTCTGGTTCGAGCTACGATGGTTTTAATGCTGATATGCTTTTAGATCTGGTAGTAACTCCCCCTAATGGCTATTCTACCGCTGGATGTGGCGATAATCGATCCCTGAGCGGACTGTCTGTTGACGATAATAAAGAATACTGGAGCAATATGTTCAGTGTCTGTAATTCTCTTCCTAATGGCAACCACAGTGGAGTTCAGGGCATCTTCTAG___GGTGATTTTATTGTCTAAAATTAGGCCGAGATCGAATGAAGCCGTGCTCAGTTTTGTAGACGAGAATTTCGATATTTTGTAACACAGTCGTTTGGTAAACTGTGAATGGTATCCATATCTTCATTCTCGGAATTGTGCGCTGCGCGCTGTGTGTTGTGTGCGTTTTTGGCACACTGTCTGTAATTGCAAACTCTGTTCAGCATCGTAGCAGACATGAAGTGTTTCTAACTGAAAGGGTGGAATTTAATCCCTTATAAGTTAAAGCTTGAATCCATATATTTGTTGGGAATAATTAAATTCTATTAGCATGCTGGAATATTTTATATTCTATGTCAGTTTAGACTTGAATGTCTGTGAAAATCTCAACTCTTTGAATTGTTGG

Fln Alignment:

AllPine_a_c60564___KAGLLRCGKSCRLRWANYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLLQMGIDPVTHKPKSESIMAPGVQSSNGSSNLSHMAQWESARLEAESRLARESKLRARGLWSAQLRNVNASSDLFSRLRRASPGFESDREESKIPGLSSALGFDCMKMTQKWDKFQDLRSGTKLDQCN--XXXXXXXXXSYSPLEN---ENRASKTSYLGLLQQAMCPSAQGSKILFNEAKKLVESQKNRQTNATATLHWSTYHIDQS-ENCDEKKPNI
A9P0V4________________KAGLLRCGKSCRLRWANYLRPDIKRGKFSAQEEQTIIQLHALLGNRWSTIATHLPKRTDNEIKNYWNTHLKKRLLQMGIDPVTHKPKSESIMAVGRQSSNGSSNLSHMAQWESARLEAESRLARESKLRAKGLWSASMRNANVSSDIFSRLRSDSQGFDSDKEELKTRGLNSTGGFECMKITQKWDKSQDLRLGAKSDQCNSSALGGPFRGYKYNPLENGQSENRASKTSYVSLLQQAMCPSAQGSKILYNEAKKLVENQKNRQANAAAT----AYNVHQSHENCGESKYNL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1711	83		16		0.994512
1719	60			40	1.0
1720	40		60		1.0
1723	40	20		40	1.0
1725		40	40		1.0
1726	50			50	1.0
1727	50		25	25	0.995533
1728	50	50			1.0
1729			25	75	0.996473
1730			50	50	1.0
1734	75		25		0.996473
1736			33	66	0.997452
1738		33		66	0.997452
1739	66	33			0.997452
1742	66	33			0.997452
1744	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain