SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124045

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene124045
CTTGTTGATACATATAGCTAAATGCGGGAGTATAGATGATGCGCGCGAGGTTTTCGATCAAATGCCTGTTAGAGACGTGCTATGCTGGAACACAATGATTGCAGGTTATTCCCAATATGGAAATATAGAGATTGCACACCTACTGTTTGAGAAAATGCCTCAACGGAATGAAGTTTCTGGAATACGATGATTGCAGGATTTGCTCAGCA

Ace file of the UniGene sp_v3.0_unigene124045

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	4.0e-11	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	1.0e-13	53%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-13	53%
RefSeq	Populus trichocarpa	XP_002333154.1	predicted protein [Populus trichocarpa]	2.0e-14	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 255 aas, your sequence is shorter than subject: 63 - 644

Fln protein: LLIHIAKCGSIDDAREVFDQMPVRDVLCWNTMIAGYSQYGNIEIAHLLFEKMPQRNEVSGIR*

Protein Length: 64

Fln nts: CTTGTTGATACATATAGCTAAATGCGGGAGTATAGATGATGCGCGCGAGGTTTTCGATCAAATGCCTGTTAGAGACGTGCTATGCTGGAACACAATGATTGCAGGTTATTCCCAATATGGAAATATAGAGATTGCACACCTACTGTTTGAGAAAATGCCTCAACGGAATGAAGTTTCTGGAATACGATGATTGCAGGATTTGCTCAGCA

Fln Alignment:

AllPine_a_c60554___AKCGSIDDAREVFDQMPVRDVLCWNTMIAGYSQYGNIEIAHLLFEKM
B8LLJ0________________AQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain