SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124029

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene124029
TGCCAATAGAACCTGATGCTGCTGTCTGGGGAGCTTTGCTTGGTGCCTGCAGGATACATACAAATGTAGAAATAGCAGAATATGCGGCAGAACAGCTTCGGGAATTGAACCCTAAAAGTATCACACCTTATGTGCTGCTGTCAGTAATCTATGCAGCAGCTGGCAGATT

Ace file of the UniGene sp_v3.0_unigene124029

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide, putative n=3 Tax=Oryza sativa RepID=Q10MA5_ORYSJ	-	-	8.0e-14	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	At4g19191; At5g44230; GSVIVT00004379001; GSVIVT00008660001; GSVIVT00011842001; GSVIVT00013464001; GSVIVT00016451001; GSVIVT00017247001; GSVIVT00017804001; GSVIVT00021596001; GSVIVT00022551001; GSVIVT00022590001; GSVIVT00024125001; GSVIVT00024276001; GSVIV

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44230.1	Pentatricopeptide repeat (PPR) superfamily protein chr5:17814336-17816309 FORWARD LENGTH=657	4.0e-16	66%
RefSeq	Arabidopsis thaliana	NP_199236.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-16	66%
RefSeq	Populus trichocarpa	XP_002330058.1	predicted protein [Populus trichocarpa]	3.0e-15	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 55 - 370

Fln protein: PIEPDAAVWGALLGACRIHTNVEIAEYAAEQLRELNPKSITPYVLLSVIYAAAGR

Protein Length: 56

Fln nts: TGCCAATAGAACCTGATGCTGCTGTCTGGGGAGCTTTGCTTGGTGCCTGCAGGATACATACAAATGTAGAAATAGCAGAATATGCGGCAGAACAGCTTCGGGAATTGAACCCTAAAAGTATCACACCTTATGTGCTGCTGTCAGTAATCTATGCAGCAGCTGGCAGATT

Fln Alignment:

AllPine_a_c60535___PIEPDAAVWGALLGACRIHTNVEIAEYAAEQLRELNPKSITPYVLLSVIYAAAGR
A9P0W0________________PVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain