SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124021

Length: 402 nt

UniGene Fasta

>sp_v3.0_unigene124021
CTGTTAAGAGATAATCCTGGTATTTAAAGAAGTTCCTGGAAGCTTCCTGAACAATTTGCCCTCACTGAAGATCCTCGATCTTAGTGGAACTGGCATAACGTCTCTGCCGCCTTGTATAGGAGGTCTGAAACATCTTGCATGCCTCCAACTACAACATACGGAGATCCGTGAATTGCCGGAAGCCATTGGCTACCTGAAGGAGCTACAATTCTTGAATGTTAGTTTCTGTCATGAATTACGGTGTCTTCCTGAGAAGAGCATAAGCGAACTCAAACGTTTGAAGGCCCTCGACCTAACCTACTGCTTCGAGTTGAGGTATCTTCCGCATGGGATGTCGGAATTGGTTTCTCTCGAAAGATTGAGGATGGAACAATGCATTCCATTGGATTTGGATGAGGCAGC

Ace file of the UniGene sp_v3.0_unigene124021

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat containing protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SWM4_RICCO	-	-	7.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002328452.1	predicted protein [Populus trichocarpa]	9.0e-16	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS43

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 245 aas, your sequence is shorter than subject: 133 - 932

Fln protein: C*EIILVFKEVPGSFLNNLPSLKILDLSGTGITSLPPCIGGLKHLACLQLQHTEIRELPEAIGYLKELQFLNVSFCHELRCLPEKSISELKRLKALDLTYCFELRYLPHGMSELVSLERLRMEQCIPLDLDEA

Protein Length: 134

Fln nts: CTGTTAAGAGATAATCCTGGTATTTAAAGAAGTTCCTGGAAGCTTCCTGAACAATTTGCCCTCACTGAAGATCCTCGATCTTAGTGGAACTGGCATAACGTCTCTGCCGCCTTGTATAGGAGGTCTGAAACATCTTGCATGCCTCCAACTACAACATACGGAGATCCGTGAATTGCCGGAAGCCATTGGCTACCTGAAGGAGCTACAATTCTTGAATGTTAGTTTCTGTCATGAATTACGGTGTCTTCCTGAGAAGAGCATAAGCGAACTCAAACGTTTGAAGGCCCTCGACCTAACCTACTGCTTCGAGTTGAGGTATCTTCCGCATGGGATGTCGGAATTGGTTTCTCTCGAAAGATTGAGGATGGAACAATGCATTCCATTGGATTTGGATGAGGCAGC

Fln Alignment:

AllPine_a_c60527___KEVPGSFLNNLPSLKILDLSGTGITSLPPCIGGLKHLACLQLQHTEIRELPEAIGYLKELQFLNVSFCHELRCLPEKSISELKRLKALDLTYCFELRYLPHGMSELVSLERLRM
B8LS43________________REVPNGFLVNLTSLRVLDLSGTKIESLPISLWHLRQLEFLGLEETLIKDVPEDICNLSQLQFLHLNQCRHLESLPCK-IGELQNLKTLDLTKCCSLTGIPREISQLTSLNRLHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain