SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123991

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene123991
AATGTATCTGCTGTCATTGTAGCCAGTGCCCTTGTAGACATGTATGCAAAATGTGGGGACATAGATAAGGCACGTGAATTGTTTGACAGGATGGGTGAAAGAGATATTCTTTCCTGGACAGTAATGATCGCAGCGTATGCACAGAATGGGTGTGGAATGCATGCTTTGAGACTTTTCCAACAAATGCAGCTAGAAGGTGCAAAGCCGGATTCGAAAACCTTTGCCA

Ace file of the UniGene sp_v3.0_unigene123991

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKC9_RICCO	-	-	4.0e-16	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	Gene names
Sma3	GSVIVT00016451001; GSVIVT00026008001; PHYPADRAFT_156474; PHYPADRAFT_169414; POPTRDRAFT_556345; POPTRDRAFT_750776; POPTRDRAFT_930184; RCOM_0759130; RCOM_0850080; VITISV_031420;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	1.0e-17	48%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	2.0e-17	48%
RefSeq	Populus trichocarpa	XP_002331135.1	predicted protein [Populus trichocarpa]	9.0e-21	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 75 - 795

Fln protein: NVSAVIVASALVDMYAKCGDIDKARELFDRMGERDILSWTVMIAAYAQNGCGMHALRLFQQMQLEGAKPDSKTFA

Protein Length: 76

Fln nts: AATGTATCTGCTGTCATTGTAGCCAGTGCCCTTGTAGACATGTATGCAAAATGTGGGGACATAGATAAGGCACGTGAATTGTTTGACAGGATGGGTGAAAGAGATATTCTTTCCTGGACAGTAATGATCGCAGCGTATGCACAGAATGGGTGTGGAATGCATGCTTTGAGACTTTTCCAACAAATGCAGCTAGAAGGTGCAAAGCCGGATTCGAAAACCTTTGCCA

Fln Alignment:

AllPine_a_c60492___SAVIVASALVDMYAKCGDIDKARELFDRMGERDILSWTVMIAAYAQNGCGMHALRLFQQMQLEGAKPDSKT
B8LQA8________________SDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain