SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123823

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene123823
AATGTCCTGTACCCTCACATGAGGAGGCTCGCTTTTCCTGTTTTGCAGAAGCTGAAGCAGGGGGTTCAGCGGTGATGGTGAGCTGTAAGATTCCATTTTCTGACATGAAAACAATAGGGGATTATCGAGAGTCACTTGCAGAAAGCATGTTCCACAGTGCTCTTAATCAAAGG

Ace file of the UniGene sp_v3.0_unigene123823

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast processing enzyme-like protein n=2 Tax=Oryza sativa RepID=Q5JKR1_ORYSJ	-	-	2.0e-16	73%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	71%

Source	Gene names
Sma3	At5g56730; B1064G04.13; B1144D11.35; GSVIVT00016610001; OsI_02423; OsJ_02226; PHYPADRAFT_141088; RCOM_1048240; VITISV_007878;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G56730.1	Insulinase (Peptidase family M16) protein chr5:22946906-22952576 REVERSE LENGTH=956	2.0e-21	73%
RefSeq	Arabidopsis thaliana	NP_200484.1	Insulinase (Peptidase family M16) protein [Arabidopsis thaliana]	3.0e-21	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1HNM4

Fln msg: Distance to subject end: 688 aas, your sequence is shorter than subject: 57 - 1021

Fln protein: CPVPSHEEARFSCFAEAEAGGSAVMVSCKIPFSDMKTIGDYRESLAESMFHSALNQR

Protein Length: 58

Fln nts: AATGTCCTGTACCCTCACATGAGGAGGCTCGCTTTTCCTGTTTTGCAGAAGCTGAAGCAGGGGGTTCAGCGGTGATGGTGAGCTGTAAGATTCCATTTTCTGACATGAAAACAATAGGGGATTATCGAGAGTCACTTGCAGAAAGCATGTTCCACAGTGCTCTTAATCAAAGG

Fln Alignment:

AllPine_a_c60284___PVPSHEEARFSCFAEAEAGGSAVMVSCKIPFSDMKTIGDYRESLAESMFHSALNQR
I1HNM4________________PVPSHIEPRFSCFVESEAAGSAVVISCKMPAGEIKTVKDYRDSLAESMFHCALNQR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain