SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123820

Length: 122 nt

UniGene Fasta

>sp_v3.0_unigene123820
CTGTGGTCAATGATGTGGACCTTGCCAGGGAACTGTACAAAAAGTCAAGCTCTATTCACAGGCGAAAGACTCGTGTTTGGCAAATGATCTGCATTTTATCACGGTTTGTGGATGAAGGTTCA

Ace file of the UniGene sp_v3.0_unigene123820

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEE0_RICCO	-	-	5.0e-09	78%
FL-Next	tr=RNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	78%
Sma3	TRP-185 like protein	-	-	6.823e-06	-

Source	Gene names
Sma3	AT4g17610; POPTRDRAFT_589922; RCOM_0702910; dl4840c;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA methyltransferase activity	GO:0008173	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein chr4:9805652-9814910 REVERSE LENGTH=1850	4.0e-12	77%
RefSeq	Arabidopsis thaliana	NP_193496.1	tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]	5.0e-12	77%
RefSeq	Populus trichocarpa	XP_002326676.1	predicted protein [Populus trichocarpa]	8.0e-13	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SEE0

Fln msg: Distance to subject end: 457 aas, your sequence is shorter than subject: 40 - 1744

Fln protein: VVNDVDLARELYKKSSSIHRRKTRVWQMICILSRFVDEGS

Protein Length: 41

Fln nts: CTGTGGTCAATGATGTGGACCTTGCCAGGGAACTGTACAAAAAGTCAAGCTCTATTCACAGGCGAAAGACTCGTGTTTGGCAAATGATCTGCATTTTATCACGGTTTGTGGATGAAGGTTCA

Fln Alignment:

AllPine_a_c60281___VNDVDLARELYKKSSSIHRRKTRVWQMICILSRFVDE
B9SEE0________________VNDKDLAKELYKKYSGIHRRKIRVWQMICVLSRFVTD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain