SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123727

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene123727
AATGTAAAAAAGGCTCTCTATGGTCTTAAACAGGCTCCAAGGGCTTGGTACTACCGTTTGGACAAATATCTTCATCAACAAGGCTTTTCAAAAGGATCAGCAGATAGCAATCTTTATATAAAAATTGAAAATGACAAATTGCTAATACTTGTTGTGTATGTAGATGATATTAT

Ace file of the UniGene sp_v3.0_unigene123727

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	9.0e-15	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Reverse transcriptase	-	-	8.871e-15	-

Source	Gene names
Sma3	NOR2; OTR3;

Source	GOs	Term	Type	e value	Identity
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 57 - 363

Fln protein: NVKKALYGLKQAPRAWYYRLDKYLHQQGFSKGSADSNLYIKIENDKLLILVVYVDDI

Protein Length: 58

Fln nts: AATGTAAAAAAGGCTCTCTATGGTCTTAAACAGGCTCCAAGGGCTTGGTACTACCGTTTGGACAAATATCTTCATCAACAAGGCTTTTCAAAAGGATCAGCAGATAGCAATCTTTATATAAAAATTGAAAATGACAAATTGCTAATACTTGTTGTGTATGTAGATGATATTAT

Fln Alignment:

AllPine_a_c60169___VKKALYGLKQAPRAWYYRLDKYLHQQGFSKGSADSNLYIKI-ENDKLLILVVYVDDI
B8LKV8________________LKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain