SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123489

Length: 191 nt

UniGene Fasta

>sp_v3.0_unigene123489
AATGTCATGGTGCAATAAAGGAAGAGGTGTATGCAGAACAACCTCTGGGATTTGAAGTTCAAGATCGAGACACTTATGTCTGCAGGTTGAAGAAAGCCCTCTATGGGTTAAAGCAAGCACCCAGAGCTTGGTATGAGAGGATGGATAGTTACTTGATGAAGTTGGGCTTCACTCGAAGCAATGCTGATCCA

Ace file of the UniGene sp_v3.0_unigene123489

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU	-	-	3.0e-28	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Reverse transcriptase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	RNA-directed DNA polymerase.	EC:2.7.7.49	-	3.529e-06	-

Source	Gene names
Sma3	At2g15650; At2g17490; B1065G12.28; LOC_Os03g06540; LOC_Os03g20080; LOC_Os03g30860; LOC_Os10g18440; LOC_Os10g30510; LOC_Os11g30700; LYC_68t000004; OJ1607A12.20; OSJNAb0008A05.20; OSJNBa0009N21.4; OSJNBa0017O06.12; OSJNBa0096I06.16; OSJNBb0008A05.28; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 202 aas, your sequence is shorter than subject: 63 - 363

Fln protein: CHGAIKEEVYAEQPLGFEVQDRDTYVCRLKKALYGLKQAPRAWYERMDSYLMKLGFTRSNADP

Protein Length: 64

Fln nts: AATGTCATGGTGCAATAAAGGAAGAGGTGTATGCAGAACAACCTCTGGGATTTGAAGTTCAAGATCGAGACACTTATGTCTGCAGGTTGAAGAAAGCCCTCTATGGGTTAAAGCAAGCACCCAGAGCTTGGTATGAGAGGATGGATAGTTACTTGATGAAGTTGGGCTTCACTCGAAGCAATGCTGATCCA

Fln Alignment:

AllPine_a_c59885___HGAIKEEVYAEQPLGFEVQDRDTYVCRLKKALYGLKQAPRAWYERMDSYLMKLGFTRSNADP
B8LKV8________________NGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain