SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123091

Length: 269 nt

UniGene Fasta

>sp_v3.0_unigene123091
GACTGGAAAACAGGTTTTGTCAGAGCTGCAATACCCCAAATCCCTCTCTCCATCCTTAATTCTGTGATTGCTGTCTGCAGATTGTCAACTGACCTGTTTCCCAACAAGGAGGTTACTGCAACTTCTGTGTCTTTGAGTGTGGGGATAATGAATTTAGTGGGTTGTTGGTTTGGGGCAATGCCTATTTGCCATGGTGCAGGTGGCCTTGCAGGGCAGTATAAGTTTGGGGCCAGGAGTGGGGCATCTGTAGCATTTCTTGGAACTGCAAA

Ace file of the UniGene sp_v3.0_unigene123091

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sulfate transporter, putative n=1 Tax=Ricinus communis RepID=B9RUY1_RICCO	-	-	4.0e-38	82%
FL-Next	Isoform 2 of Molybdate transporter 2 OS=Arabidopsis thaliana GN=MOT2	-	-	0.0	80%
Sma3	Putative sulfate transporter	-	-	7.868e-14	-

Source	Gene names
Sma3	AT1G80310; At1g80310; At2g25680; B1147B12.16; CHLREDRAFT_151770; GSVIVT00032545001; GSVIVT00034528001; MICPUN_101424; MOT1; Mot1; OSTLU_50753; Os01g0645900; OsI_03055; OsI_27474; OsI_27478; OsJ_02808; OsJ_25721; Ot10g00980; P0038D11.6; P0707D10.33; PHATRD

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	molybdate ion transmembrane transporter activity	GO:0015098	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	molybdate ion transport	GO:0015689	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80310.1	sulfate transmembrane transporters chr1:30194951-30196345 FORWARD LENGTH=464	8.40779e-45	80%
RefSeq	Arabidopsis thaliana	NP_178147.1	sulfate transmembrane transporter [Arabidopsis thaliana]	9.80909e-45	80%
RefSeq	Populus trichocarpa	XP_002308631.1	predicted protein [Populus trichocarpa]	3.9937e-43	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WP36-2

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 89 - 377

Fln protein: DWKTGFVRAAIPQIPLSILNSVIAVCRLSTDLFPNKEVTATSVSLSVGIMNLVGCWFGAMPICHGAGGLAGQYKFGARSGASVAFLGTA

Protein Length: 90

Fln nts: GACTGGAAAACAGGTTTTGTCAGAGCTGCAATACCCCAAATCCCTCTCTCCATCCTTAATTCTGTGATTGCTGTCTGCAGATTGTCAACTGACCTGTTTCCCAACAAGGAGGTTACTGCAACTTCTGTGTCTTTGAGTGTGGGGATAATGAATTTAGTGGGTTGTTGGTTTGGGGCAATGCCTATTTGCCATGGTGCAGGTGGCCTTGCAGGGCAGTATAAGTTTGGGGCCAGGAGTGGGGCATCTGTAGCATTTCTTGGAACTGCAAA

Fln Alignment:

AllPine_a_c59408___DWKTGFVRAAIPQIPLSILNSVIAVCRLSTDLFPNKEVTATSVSLSVGIMNLVGCWFGAMPICHGAGGLAGQYKFGARSGASVAFLG
Q0WP36-2______________DWKIGFLRAAIPQIPLSVLNSVIAVCKLSNDLF-DKELSATTVSISVGVMNLIGCWFGAMPVCHGAGGLAGQYRFGARSGLSVIFLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain