SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene122473

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene122473
ATGGGCAATGCCTCGAAATTTATCTCCAAAATCATGAGCCAAGAAATTATTTTAAGGGATGCCAACCGTTTTCACCATTTTAAGGATGGAATGTGTTCTTGTGGAGATTACTGGTGATACTAGTTGAAACTTAAAATGAGTGACGGACAGGACATTGCATAAGCACTTGTGCTTATTCCTTTCCTCAAGGTTGCAGCTCCCAGTCAAGTGT

Ace file of the UniGene sp_v3.0_unigene122473

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide, putative [Oryza sativa Japonica Group] gb\|EAZ27214.1\| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]	-	-	1.0e-10	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	Gene names
Sma3	At1g09410; At1g56690; At2g22070; At3g12770; At3g23330; At3g57430; At4g16835; At4g30700; At4g33170; At4g33990; B1032F05.19; B1080A02.28; DYW10; DYW9; EMB2758; F14J9.7; F17I5.180; F25P12.87; F4I10.100; FCAALL.441; GSVIVT00000282001; GSVIVT00003060001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33170.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:15995701-15998673 REVERSE LENGTH=990	3.0e-14	72%
RefSeq	Arabidopsis thaliana	NP_195043.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-14	72%
RefSeq	Populus trichocarpa	XP_002299387.1	predicted protein [Populus trichocarpa]	8.0e-15	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 39 - 246

Fln protein: MGNASKFISKIMSQEIILRDANRFHHFKDGMCSCGDYW*

Protein Length: 40

Fln nts: ATGGGCAATGCCTCGAAATTTATCTCCAAAATCATGAGCCAAGAAATTATTTTAAGGGATGCCAACCGTTTTCACCATTTTAAGGATGGAATGTGTTCTTGTGGAGATTACTGGTGA___TACTAGTTGAAACTTAAAATGAGTGACGGACAGGACATTGCATAAGCACTTGTGCTTATTCCTTTCCTCAAGGTTGCAGCTCCCAGTCAAGTGT

Fln Alignment:

AllPine_a_c58675___ASKFISKIMSQEIILRDANRFHHFKDGMCSCGDYW
D5AAE0________________ATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain