SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene122249

Length: 323 nt

UniGene Fasta

>sp_v3.0_unigene122249
ATGATGACTACTGGGACGCTTGTTATGAGTGCATTTCTCGTTGTTACAGGAGTTTTTGGCTCCAACATTAGGATTTCACTCTTTAATGATGGTGGACTTCCTCAGTTTTTATGGGTTGTTTGTGGAACCGGCTCATGTGTTATTTTAGCTTATCTGTTAGTCATAGCCTGGTGTAAGCATAAGCGCCTTCTTGAATGAGCCATGCCCAAAATGCTCATCATTTTTCAGTGAGGTTTTTGGTGGAACCTGCTCATGTATTCTTTTAACTTATATAATTGTCATACTCTGGTGTAAGCATGAGTTCCTTTTAATAAGCAATGCCT

Ace file of the UniGene sp_v3.0_unigene122249

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	magnesium transporter MRS2-3 [Arabidopsis thaliana] sp\|Q9LJN2.1\|MRS23_ARATH RecName: Full=Magnesium transporter MRS2-3; AltName: Full=Magnesium Transporter 4; Short=AtMGT4 dbj\|BAB02549.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN17435.1\| unkno	-	-	1.0e-11	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	GSVIVT00001499001; PHYPADRAFT_173741; POPTRDRAFT_202135; VITISV_038594;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19640.1	MGT4, MRS2-3 magnesium transporter 4 chr3:6820969-6823104 FORWARD LENGTH=484	2.0e-15	55%
RefSeq	Arabidopsis thaliana	NP_188598.2	magnesium transporter MRS2-3 [Arabidopsis thaliana]	3.0e-15	55%
RefSeq	Populus trichocarpa	XP_002313918.1	magnesium transporter, partial [Populus trichocarpa]	1.0e-19	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQE7

Fln msg: your sequence is shorter than subject: 66 - 483

Fln protein: MMTTGTLVMSAFLVVTGVFGSNIRISLFNDGGLPQFLWVVCGTGSCVILAYLLVIAWCKHKRLLE*

Protein Length: 67

Fln nts: ATGATGACTACTGGGACGCTTGTTATGAGTGCATTTCTCGTTGTTACAGGAGTTTTTGGCTCCAACATTAGGATTTCACTCTTTAATGATGGTGGACTTCCTCAGTTTTTATGGGTTGTTTGTGGAACCGGCTCATGTGTTATTTTAGCTTATCTGTTAGTCATAGCCTGGTGTAAGCATAAGCGCCTTCTTGAATGA___GCCATGCCCAAAATGCTCATCATTTTTCAGTGAGGTTTTTGGTGGAACCTGCTCATGTATTCTTTTAACTTATATAATTGTCATACTCTGGTGTAAGCATGAGTTCCTTTTAATAAGCAATGCCT

Fln Alignment:

AllPine_a_c58390___MMTTGTLVMSAFLVVTGVFGSNIRISLFNDGGLPQFLWVVCGTGSCVILAYLLVIAWCKHKRLLE
B8LQE7________________MMTTGTLVMSAFLVVTGIFGMNIQISLFDDGGLPQFLWVVGGTGSCIILAYILVIAWCKHKRLLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain