SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene122150

Length: 545 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene122150
AGAGTCTGATTCGGCTGTTTGCTGCAGTAACAATTCTGATAATCTTCTTGCCATTGCTGATAGTCATACGCTCAGAGCTTCAAAAGTCAGAAAATGTTCTTCAACTGGACCATAATGATGCTTTTCGGGTCGAAGAGAGTCTGAGATTGAACTGGAAAGCTGCTGCAAGGATATCAACTCTGCCTCCGTAGATATATCAGCAATTGTAACAGAAGGCACATCCGCTGATAGTAGCAACGAATTAGTACTCGGGACTGATGATGAGAAGAACATTAGTAAAGGCAAAAGGCCTCAAAGAGGTGAAGGCCATACAATTCCTCAAGCATTAATGAGCTTAGACTTGTGGATACTTTTCTTGGCAACGACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAAATTGGAAAATCCTTGCGATACTCCTCTCTGAGTATAAGCACTTTTGTTTCACTTCTGAGCATCTGGAACTTTTTAGGCCGAGTTGGGGCAGGCTTCATCTCCGAAATACTTCTGCACAAGTATTCAATTCCAA

Ace file of the UniGene sp_v3.0_unigene122150 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Nodulin family protein, putative, expressed	-	-	6.971e-17	-

Source	Gene names
Sma3	At2g28120; At2g28120/F24D13.9; At2g34350; At2g39210; GSVIVT00000612001; GSVIVT00012484001; GSVIVT00012949001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018125001; GSVIVT00018126001; GSVIVT00018127001; GSVIVT00022162001; LOC_Os03g47810; LOC_Os03g58580;

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Uncharacterised domain NUC173	IPR012978	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28120.1	Major facilitator superfamily protein chr2:11985934-11987667 FORWARD LENGTH=577	4.0e-29	62%
RefSeq	Arabidopsis thaliana	NP_180379.1	major facilitator protein [Arabidopsis thaliana]	5.0e-29	62%
RefSeq	Populus trichocarpa	XP_002326206.1	predicted protein, partial [Populus trichocarpa]	1.0e-32	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 173 aas, your sequence is shorter than subject: 181 - 626

Fln protein: ESDSAVCCSNNSDNLLAIADSHTLRASKVRKCSSTGP**CFSGRRESEIELESCCKDINSASVDISAIVTEGTSADSSNELVLGTDDEKNISKGKRPQRGEGHTIPQALMSLDLWILFLATTCGLGSTITAIDNMGQIGKSLRYSSLSISTFVSLLSIWNFLGRVGAGFISEILLHKYSIP

Protein Length: 182

Fln nts: AGAGTCTGATTCGGCTGTTTGCTGCAGTAACAATTCTGATAATCTTCTTGCCATTGCTGATAGTCATACGCTCAGAGCTTCAAAAGTCAGAAAATGTTCTTCAACTGGACCATAATGATGCTTTTCGGGTCGAAGAGAGTCTGAGATTGAACTGGAAAGCTGCTGCAAGGATATCAACTCTGCCTCCGTAGATATATCAGCAATTGTAACAGAAGGCACATCCGCTGATAGTAGCAACGAATTAGTACTCGGGACTGATGATGAGAAGAACATTAGTAAAGGCAAAAGGCCTCAAAGAGGTGAAGGCCATACAATTCCTCAAGCATTAATGAGCTTAGACTTGTGGATACTTTTCTTGGCAACGACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAAATTGGAAAATCCTTGCGATACTCCTCTCTGAGTATAAGCACTTTTGTTTCACTTCTGAGCATCTGGAACTTTTTAGGCCGAGTTGGGGCAGGCTTCATCTCCGAAATACTTCTGCACAAGTATTCAATTCCAA

Fln Alignment:

AllPine_a_c58275___EKNISKGKRPQRGEGHTIPQALMSLDLWILFLATTCGLGSTITAIDNMGQIGKSLRYSSLSISTFVSLLSIWNFLGRVGAGFISEILLHKYSIP
B8LRH5________________ENQIVCNSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGF--VDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain