SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121918

Length: 520 nt

UniGene Fasta

>sp_v3.0_unigene121918
GACGCTTTACGACGTGGACCTGGTGCAGAGGATATTGGAGCACTTCTTGATGCAACAACAAACTCAGGAGCCGCCTAGTCCTTGTCGCAGTGCCGGATATGGTGCGTCTGCTGGGGAAAAACTGCATGCCGCAGCAGCTGCTAGCGCAATAACAAAAGTAGCTAGGCTTGTGGACAGTTATATAACGGAGATTGCTCGGGACAGGAATCTTTCAATGAGCAAATTTCAAGTTCTGGCTGAAGCGTTGCCGGACAGTGCTCGAACTTGTGACGATGGCCTATACAGAGCGATTGATTCCTATCTCAAGGCCCATCCTGTGTTATCAGAACACGAACGGAAAAGGCTATGTAAAGTAATGAATTACGAGACGTTATCACTTGACGCTTGCATACACGCTGCTCATAACGAGCGTCTTCCTCTGAGGACTGTCGTACAGGTTCTCTTCTCCCAGCAAGCAAAGATGGCAAACACAATTGCCAGCAATAACGTGCCCATCAAAATGGATGATGATCATAATCGA

Ace file of the UniGene sp_v3.0_unigene121918

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NPH3 domain containing protein	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Transposon protein, putative, Mutator sub-class, expressed	-	-	6.035e-13	-

Source	Gene names
Sma3	5; 80A08_21; At1g30440; At1g67900; At2g14820; At3g08570; At5g03250; At5g10250; At5g13600; At5g48800; At5g64330; B1394A07.4; CPT1; F15A17_280; F17O14.4; F18D22_20; F26G16.2; GSVIVT00001452001; GSVIVT00001901001; GSVIVT00008407001; GSVIVT00013470001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	blue light signaling pathway	GO:0009785	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64330.1	NPH3, RPT3, JK218 Phototropic-responsive NPH3 family protein chr5:25727568-25730225 FORWARD LENGTH=746	62%
RefSeq	Arabidopsis thaliana	NP_568989.1	root phototropism protein 3 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002310495.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 173 - 648

Fln protein: TLYDVDLVQRILEHFLMQQQTQEPPSPCRSAGYGASAGEKLHAAAAASAITKVARLVDSYITEIARDRNLSMSKFQVLAEALPDSARTCDDGLYRAIDSYLKAHPVLSEHERKRLCKVMNYETLSLDACIHAAHNERLPLRTVVQVLFSQQAKMANTIASNNVPIKMDDDHNR

Protein Length: 174

Fln nts: GACGCTTTACGACGTGGACCTGGTGCAGAGGATATTGGAGCACTTCTTGATGCAACAACAAACTCAGGAGCCGCCTAGTCCTTGTCGCAGTGCCGGATATGGTGCGTCTGCTGGGGAAAAACTGCATGCCGCAGCAGCTGCTAGCGCAATAACAAAAGTAGCTAGGCTTGTGGACAGTTATATAACGGAGATTGCTCGGGACAGGAATCTTTCAATGAGCAAATTTCAAGTTCTGGCTGAAGCGTTGCCGGACAGTGCTCGAACTTGTGACGATGGCCTATACAGAGCGATTGATTCCTATCTCAAGGCCCATCCTGTGTTATCAGAACACGAACGGAAAAGGCTATGTAAAGTAATGAATTACGAGACGTTATCACTTGACGCTTGCATACACGCTGCTCATAACGAGCGTCTTCCTCTGAGGACTGTCGTACAGGTTCTCTTCTCCCAGCAAGCAAAGATGGCAAACACAATTGCCAGCAATAACGTGCCCATCAAAATGGATGATGATCATAATCGA

Fln Alignment:

AllPine_a_c57993___TLYDVDLVQRILEHFLMQQQTQEP----PSPCRSAGYGXXXXXXXXXXXXXXXXXXXXRLVDSYITEIARDRNLSMSKFQVLAEALPDSARTCDDGLYRAIDSYLKAHPVLSEHERKRLCKVMNYETLSLDACIHAAHNERLPLRTVVQVLFSQQAKMANTIA
B8LPD8________________TLYDIDCVQRILQHFMAGQQGAESTLVNPHGFEEGGF--------MGSPSMTPIMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRVVVQVLFFEQLQLRNAIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain