SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121800

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene121800
GGCAGTCCAAGCTCTTTCGCATTCCACCAGCGAAGAAAAATCGTCATATTGGCCGTGGCGATGGCGGTGTCAGCGCTGCGGAAGCCAGATCCAATGGACGTGCTATCGAATTCCTGGTACCATCTGAGGCTGTCAGTGAGGCAGTCCGCAGAGAGTGCCTACATGGGACGCCATAGTATTAACAGCTGCCAGTCCTGAGCAGGCGGAGCTCTACGAATGGCAGCTTAAGAGAGCCAAA

Ace file of the UniGene sp_v3.0_unigene121800

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bifunctional fucokinase/fucose pyrophosphorylase n=7 Tax=Camelineae RepID=FKGP_ARATH	-	-	3.0e-12	90%
FL-Next	sp=Bifunctional fucokinase/fucose pyrophosphorylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	F6F3.3 protein	-	-	9.26e-06	-

Source	Gene names
Sma3	F6F3.3; POPTRDRAFT_572424;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	phosphorylation	GO:0016310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	L-fucokinase	IPR012887	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01220.1	FKGP, AtFKGP L-fucokinase/GDP-L-fucose pyrophosphorylase chr1:91750-95552 FORWARD LENGTH=1055	1.0e-14	90%
RefSeq	Arabidopsis thaliana	NP_563620.1	L-fucokinase/GDP-L-fucose pyrophosphorylase [Arabidopsis thaliana]	1.0e-14	90%
RefSeq	Populus trichocarpa	XP_002320881.1	predicted protein [Populus trichocarpa]	2.0e-14	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LNJ9

Fln msg: Separated hits, possible frame ERROR between 141 and 146, Distance to subject end: 997 aas, your sequence is shorter than subject: 60 - 1055

Fln protein: MAVSALRKPDPMDVLSNSWYHLRLSVxxxPQRVPTWDAIVLTAASPEQAELYEWQLKRAK

Protein Length: 61

Fln nts: GGCAGTCCAAGCTCTTTCGCATTCCACCAGCGAAGAAAAATCGTCATATTGGCCGTGGCG_-_ATGGCGGTGTCAGCGCTGCGGAAGCCAGATCCAATGGACGTGCTATCGAATTCCTGGTACCATCTGAGGCTGTCAGTGAGxxxxxxTCCGCAGAGAGTGCCTACATGGGACGCCATAGTATTAACAGCTGCCAGTCCTGAGCAGGCGGAGCTCTACGAATGGCAGCTTAAGAGAGCCAAA

Fln Alignment:

AllPine_a_c57853___RKPDPMDVLSNSWYHLRLSVRxxPQRVPTWDAIVLTAASPEQAELYEWQLKRAK
Q9LNJ9________________KKADLATVLRKSWYHLRLSVRxxPTRVPTWDAIVLTAASPEQAELYDWQLRRAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain