SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121754

Length: 797 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene121754

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Tetratricopeptide-like helical	-	-	2.101e-14	-

Source	Gene names
Sma3	At1g08070; At1g09410; At1g11290; At1g20230; At1g56690; At2g22070; At3g12770; At3g23330; At3g24000; At3g26782; At3g46790; At3g49140; At3g49170; At3g57430; At4g02750; At4g18750; At4g21065; At4g33990; At4g37380; At5g09950; At5g16860; At5g40405; At5g66520; B1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	55%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002300388.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 265 - 795

Fln protein: QTGTKPNHITFTAILTACSHAGLVDQGWQYFQCMKSDYVLAPNLEHYACLVDLLGRAGHLDEAHDTIKKMPLEPIPNVWGALLGACRIHCNIELGEQAAKHLFELEPTNAGYYVLLSNMYAEARRWEDVVKLRNMMKERGVKKQPGCSAVAVHREVHTFLVGDRTHPQSEKIYAMLEILYGQMRKAGYVPDTNLVLQDVDEETKENILCSHSEKIAISFGIISTSPGIPIRIMKNLRVCSDCHNATKFNSKVVGREIIVRDANRF

Protein Length: 266

Fln nts: ACAGACAGGCACAAAGCCAAATCATATCACATTCACAGCTATTTTGACTGCCTGCTCTCATGCAGGGTTAGTTGACCAGGGATGGCAATACTTTCAGTGCATGAAGTCAGATTATGTCCTTGCACCTAACCTGGAACATTATGCATGCTTGGTTGACCTTCTTGGGCGTGCAGGGCATCTAGATGAAGCACATGACACTATCAAAAAGATGCCATTAGAGCCTATTCCAAATGTGTGGGGAGCCTTGCTTGGTGCCTGCAGAATTCACTGCAATATTGAGCTTGGAGAACAAGCAGCAAAACACCTCTTTGAATTAGAACCAACCAATGCTGGATATTATGTACTGTTGTCAAACATGTATGCTGAGGCACGCAGGTGGGAGGATGTAGTAAAGTTGAGGAATATGATGAAAGAGAGGGGAGTGAAGAAGCAACCAGGATGCAGTGCTGTTGCGGTACATAGAGAGGTTCATACATTCCTCGTGGGAGACAGAACACATCCTCAGTCTGAAAAAATTTATGCAATGTTGGAAATCTTGTATGGGCAAATGAGGAAGGCAGGTTATGTGCCTGACACAAATCTTGTTCTGCAGGATGTGGATGAGGAGACTAAGGAAAACATTCTGTGCAGTCATAGTGAGAAGATAGCCATTAGTTTTGGGATCATCAGCACAAGCCCAGGCATCCCTATTCGTATCATGAAGAACCTTCGTGTGTGTAGTGACTGCCACAATGCCACCAAGTTTAACTCCAAGGTTGTTGGGCGAGAAATTATTGTGAGAGATGCAAACAGATTCC

Fln Alignment:

AllPine_a_c57799___QTGTKPNHITFTAILTACSHAGLVDQGWQYFQCMKSDYVLAPNLEHYACLVDLLGRAGHLDEAHDTIKKMPLEPIPNVWGALLGACRIHCNIELGEQAAKHLFELEPTNAGYYVLLSNMYAEARRWEDVVKLRNMMKERGVKKQPGCSAVAVHREVHTFLVGDRTHPQSEKIYAMLEILYGQMRKAGYVPDTNLVLQDVDEETKENILCSHSEKIAISFGIISTSPGIPIRIMKNLRVCSDCHNATKFNSKVVGREIIVRDANRF
B8LQA8________________ETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain