SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121735

Length: 440 nt

UniGene Fasta

>sp_v3.0_unigene121735
ATACACCATGGCAGGGATTCTCAGAGCATGTGCTAGTGTAGCAGCTCTAGAGCAGGGCAAACAGGTCCATGCAGACATTGTTAAAATAGGATTTGAATCGGATGTGTCTGTAAGTAATGGTCTTGTTGACATGTATGGCAAATGTGGAAGGATAGAGGATGCACAGGAAGTCTTCAGTAAGCTTCTTGAACCTGATGTGGCCTCATGGAATGCGATGCTTTCGGGATTAGCACACATTGATATGGCAAGGAGGCCGTCCTCCTGTTCGAACAAATGCTGCATACGGGCGTGAAACCAAACCAGATCACCTTTGTAGTTGTTCTCTCAGGATGTAGCCATGCGGGCCTAGTGGATGAAGGTCGAAACTACTTTGAGTGCATGACTCGAAACCATGGCATCAGCCCAAAAGCAGAGCACTATAGCTGTATGGTTGACCTTTT

Ace file of the UniGene sp_v3.0_unigene121735

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9STF3.1\|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46790, chloroplastic; AltName: Full=Protein CHLORORESPIRATORY REDUCTION 2; Flags: Precursor emb\|CAB511	-	-	8.0e-36	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At3g46790; At4g13650; CRR2; F18A5.40; GSVIVT00002068001; GSVIVT00015531001; GSVIVT00021620001; GSVIVT00025485001; GSVIVT00029102001; GSVIVT00035822001; LOC_Os11g10740; OA_CBa016E12-3; OJ1661_C12.21; OSJNBa0023I17.4; Os01g0715700; Os01g0848300; Os02g016460

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G46790.1	CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:17231975-17233948 REVERSE LENGTH=657	9.0e-38	58%
RefSeq	Arabidopsis thaliana	NP_190263.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-37	58%
RefSeq	Populus trichocarpa	XP_002305120.1	predicted protein [Populus trichocarpa]	4.0e-38	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Overlapping hits, possible frame ERROR between 232 and 223, Distance to subject end: 225 aas, your sequence is shorter than subject: 144 - 370

Fln protein: MAGILRACASVAALEQGKQVHADIVKIGFESDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMLxxxxxH*YGKEAVLLFEQMLHTGVKPNQITFVVVLSGCSHAGLVDEGRNYFECMTRNHGISPKAEHYSCMVDL

Protein Length: 145

Fln nts: ATACACC_-_ATGGCAGGGATTCTCAGAGCATGTGCTAGTGTAGCAGCTCTAGAGCAGGGCAAACAGGTCCATGCAGACATTGTTAAAATAGGATTTGAATCGGATGTGTCTGTAAGTAATGGTCTTGTTGACATGTATGGCAAATGTGGAAGGATAGAGGATGCACAGGAAGTCTTCAGTAAGCTTCTTGAACCTGATGTGGCCTCATGGAATGCGATGCTTxxxxxxxxxxxxxxxCATTGATATGGCAAGGAGGCCGTCCTCCTGTTCGAACAAATGCTGCATACGGGCGTGAAACCAAACCAGATCACCTTTGTAGTTGTTCTCTCAGGATGTAGCCATGCGGGCCTAGTGGATGAAGGTCGAAACTACTTTGAGTGCATGACTCGAAACCATGGCATCAGCCCAAAAGCAGAGCACTATAGCTGTATGGTTGACCTTTT

Fln Alignment:

AllPine_a_c57776___MAGILRACASVAALEQGKQVHADIVKIGFESDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMLSxxxTH*YGKEAVLLFEQMLHTGVKPNQITFVVVLSGCSHAGLVDEGRNYFECMTRNHGISPKAEHYSCMVDL
A9P0W0________________MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISxxxQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain