SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121691

Length: 107 nt

UniGene Fasta

>sp_v3.0_unigene121691
GCATGAACGTGAGTTACTGAGTTCACATGGATTTAGTCAGAACCAGTTAACCTTATGGAAGTACCCATCTATGGTGAAGATTACTGAACTTACAGGTCATAACTTCT

Ace file of the UniGene sp_v3.0_unigene121691

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana] emb\|CAB38785.1\| WD-repeat protein-like protein [Arabidopsis thaliana] emb\|CAB80044.1\| WD-repeat protein-like protein [Arabidopsis thaliana] gb\|ABG48494.1\| At4g33270 [Arabidopsis thalia	-	-	7.0e-10	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Putative cdc20 protein	-	-	5.447e-08	-

Source	Gene names
Sma3	AT4g33260; AT4g33270; At4g33260; At4g33270; At4g33270/F17M5_30; At5g26900; At5g27570; At5g27945; CDC20; CDC20.1; CDC20.2; CDC20.3; CDC20_1; CHLREDRAFT_130713; F15P11.5; F17M5.20; F17M5.30; F2P16.8; GSVIVT00001955001; GSVIVT00001962001; GSVIVT00001966001;

Source	GOs	Term	Type	e value	Identity
Sma3	cell division	GO:0051301	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33260.1	CDC20.2 Transducin family protein / WD-40 repeat family protein chr4:16041233-16043180 REVERSE LENGTH=447	2.0e-14	87%
RefSeq	Arabidopsis thaliana	NP_001190900.1	cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana]	2.0e-14	87%
RefSeq	Populus trichocarpa	XP_002322988.1	predicted protein, partial [Populus trichocarpa]	2.0e-14	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 35 - 508

Fln protein: HERELLSSHGFSQNQLTLWKYPSMVKITELTGHNF

Protein Length: 36

Fln nts: GCATGAACGTGAGTTACTGAGTTCACATGGATTTAGTCAGAACCAGTTAACCTTATGGAAGTACCCATCTATGGTGAAGATTACTGAACTTACAGGTCATAACTTCT

Fln Alignment:

AllPine_a_c57727___ELLSSHGFSQNQLTLWKYPSMVKITELTGH
B8LPX8________________ELVSTHGYSQNQIMVWRYPSMSKLATLTGH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain