SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121677

Length: 896 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene121677 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein S1 n=2 Tax=Pinus monticola RepID=D3IZ11_PINMO	-	-	79%
FL-Next	tr=Thaumatin-like protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	79%
Sma3	Thaumatin-like protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
117	25		75		0.996473
118		25	75		0.996473
179	25	75			0.996477
180	75			25	0.996473
182	75			25	0.996479
235	16		83		0.994512
237	83		16		0.994512
238			83	16	0.994512
282	16		83		0.994512
285		83		16	0.994512
286		83		16	0.994512
462	10	90			0.90298
778	28		71		1.0
779	14	85			0.993533
780	14			85	0.993533
781			85	14	0.993533
825	20	80			0.995493
883	20			80	0.995493
884		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain